RNA id: TCONS_00003825


Basic Information

Item Value
RNA id TCONS_00003825
length 518
RNA type processed_transcript
GC content 0.48
exon number 3
gene id XLOC_001951
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10801564 ~ 10824286 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagatgcatGTAAGTCGGAGCCAGATTCGGGTCCATGTTTCGGGATGTTAACACGCTTTCATTATAACTCGTCCATCATGAGCTGTCAGATGTTCACCTTTGGAGGCTGCATGGGCAACCAGAACAACTTCCCCACTGAGAAAGACTGTCTGCAGAGCTGCCGCACTGAGGCTGCCTGTAGGCTGCCTATGGACGCCGGCCCCTGTAAAGCATTTGTAGACCTGTGGGCCTTTGATTCGTCCTCTGGAAAGTGCTTGTCCCTTAAGTATGGAGGCTGTAAGGGCAATGGTAACAGGTTTTACAGCAAGAAGGAGTGTGACGAGTACTGTGGGGCCATGATGAGGAACGGAGACGATGAGTTTCTTTCTGTGAACTGAGAAGCTTGTGAAGCATTTACTTCAGTTTAAACAAAAGAGTAACGTGGATCCATTTGCAAAAGGCATTAACTTAAGTCCACAATAAATAGAGTCCTGAT

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-040426-1608 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within protein-chromophore linkage. Predicted to be located in extracellular region. Predicted to be active in cell surface and plasma membrane. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in acute kidney failure and adult respiratory distress syndrome. Orthologous to human AMBP (alpha-1-microglobulin/bikunin precursor).

Ensembl:

ensembl_id ENSDART00000135645

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003822 lncRNA upstream 5125 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00003816 lncRNA upstream 85505 10728995 ~ 10737250 (+) True XLOC_001948
TCONS_00005832 lncRNA upstream 526966 10288294 ~ 10295789 (+) True XLOC_001943
TCONS_00005687 lncRNA upstream 527007 10288148 ~ 10295748 (+) False XLOC_001943
TCONS_00003804 lncRNA upstream 627153 10178101 ~ 10195602 (+) False XLOC_001941
TCONS_00003828 lncRNA downstream 156785 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005834 lncRNA downstream 436706 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00005688 lncRNA downstream 689938 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005835 lncRNA downstream 829146 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA downstream 829301 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00003819 mRNA upstream 25819 10788811 ~ 10796936 (+) True XLOC_001950
TCONS_00003818 mRNA upstream 26579 10788811 ~ 10796176 (+) False XLOC_001950
TCONS_00003817 mRNA upstream 39945 10738880 ~ 10782810 (+) True XLOC_001949
TCONS_00003815 mRNA upstream 85505 10728870 ~ 10737250 (+) False XLOC_001948
TCONS_00003814 mRNA upstream 121986 10677697 ~ 10700769 (+) True XLOC_001947
TCONS_00003826 mRNA downstream 149347 10972795 ~ 10998499 (+) False XLOC_001952
TCONS_00003829 mRNA downstream 214744 11038192 ~ 11094127 (+) True XLOC_001953
TCONS_00003831 mRNA downstream 436722 11260170 ~ 11280583 (+) False XLOC_001955
TCONS_00003832 mRNA downstream 438128 11261576 ~ 11276823 (+) False XLOC_001955
TCONS_00003833 mRNA downstream 441939 11265387 ~ 11283239 (+) False XLOC_001955
TCONS_00003821 other upstream 19399 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003803 other upstream 909578 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003802 other upstream 1096864 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003791 other upstream 1474249 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003779 other upstream 1942629 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003827 other downstream 149362 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003830 other downstream 292406 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003841 other downstream 675245 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003843 other downstream 950957 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003844 other downstream 1509805 12333253 ~ 12333369 (+) True XLOC_001966

Expression Profile

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