RNA id: TU1057250


Basic Information

Item Value
RNA id TU1057250
length 459
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G928701
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81063706 ~ 81064164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacaaactacaacttctccctcatttgtctaaaaaccagcctgaaactcaatctaaagactgttgacatctagtggaagccctaggaactgcaatcaggGACATTTTTGCCCTATTATAAATGTGCCAGGCATTGAAATCAGTGGTATGCTGAATTTTATTTttatggtttgtcctctgggtttcgcctgcattttcagttctgttatactcacagacattattttaacagttttagaaacaagagtgttttctatccaaatctaccaattatatgcatatcctagcttctgggcctgagtaacaggcagtttactttgggcacacttttcatccggacgtcaaaataccgcccccctatcccaaagaagttaaggtAGTTACCAGTACTGTTTGTCACGAAGGTAAAGTATGTTAAGATACTGTATGTCTAGAAgtgtcacggcagatttcctcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057246 lncRNA upstream 2788 81060576 ~ 81060918 (+) True G928697
TU1057241 lncRNA upstream 18724 81044379 ~ 81044982 (+) True G928692
TU1057230 lncRNA upstream 46064 81016803 ~ 81017642 (+) False G928685
TU1057232 lncRNA upstream 46064 81016803 ~ 81017642 (+) True G928685
TU1057131 lncRNA upstream 50164 81012524 ~ 81013542 (+) True LOC110514786
TU1057261 lncRNA downstream 3720 81067884 ~ 81311453 (+) False G928705
TU1057280 lncRNA downstream 8912 81073076 ~ 81075255 (+) False G928713
TU1057282 lncRNA downstream 8912 81073076 ~ 81077023 (+) True G928713
TU1057288 lncRNA downstream 14977 81079141 ~ 81099454 (+) True G928715
TU1057296 lncRNA downstream 16830 81080994 ~ 81085639 (+) True G928717
XM_036934161.1 mRNA upstream 49455 80942545 ~ 81014251 (+) False LOC110514786
XR_005034258.1 mRNA upstream 127645 80935213 ~ 80936061 (+) False LOC118936804
trnae-cuc-165 mRNA upstream 133539 80930096 ~ 80930167 (+) True trnae-cuc-165
XM_036934159.1 mRNA upstream 141068 80866988 ~ 80922638 (+) False LOC110515606
XM_036934174.1 mRNA downstream 153811 81217975 ~ 81220397 (+) True LOC110530284
XM_036934178.1 mRNA downstream 177470 81241634 ~ 81247351 (+) False LOC118936811
XM_036934177.1 mRNA downstream 177475 81241639 ~ 81247351 (+) False LOC118936811
XM_036934170.1 mRNA downstream 309419 81373583 ~ 81386366 (+) False LOC110510686
XM_036934187.1 mRNA downstream 422432 81486596 ~ 81506153 (+) False LOC110518956
TU1057129 other upstream 233051 80821664 ~ 80830655 (+) False LOC110515606
TU1056700 other upstream 747137 80311944 ~ 80316569 (+) True G928335
TU1056528 other upstream 1035487 80027002 ~ 80028219 (+) True G928206
TU1055948 other upstream 1306662 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 1462934 79597645 ~ 79600772 (+) True LOC110514189
TU1057314 other downstream 55401 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 55401 81119565 ~ 81120246 (+) True G928731
TU1057265 other downstream 120721 81184885 ~ 81313748 (+) False G928705
TU1057333 other downstream 174933 81239097 ~ 81242550 (+) False LOC118936811
TU1057339 other downstream 178930 81243094 ~ 81245826 (+) False LOC118936811

Expression Profile