RNA id: TU1057265


Basic Information

Item Value
RNA id TU1057265
length 976
RNA type TUCP
GC content 0.47
exon number 5
gene id G928705
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81067884 ~ 81313748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccattctaccattaggttggtaccccaccactgttactatccattctaccattaggttggtaccccaccactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactgtccccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccatgcaaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattgggttggtaccccaacactgaTACTGTCCCCATTCTACCATTAtgttggtaccccaacactgttgaTCTGAAGCTGTGAACAAAGATAGGCGTCCAGTTCCCCAAATAAGTTGATCATCCTGTAACTTGACTCAGTTCCTTTTCTCAACACCATGTCGATGATGTCACGTGCCTTCTCTGCCCTCTCAGCTATCACCTTCACTGACTCCATTTCCTCCTGGTTGATGACTGTGTGTTGCAGGAGTCTGTCCAGCAGACCATCCAGGACAGGTCCTGATACTCGTTTCACAAACTCTGTCCGTACAGAACGCAGCTGCTGCTCTGCAGAACCAGTCAGACTACTTTCAGCCGGACCTCCTGCCCCCAACACAGCACCTGAGAGAGTCAGGGACGGTTTCACAGACATAGAAAAACAGACTGGGGcattcagaaccaggctaatctacatcaactcctggaggagatgtcattggggcattcagaaccagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057326 lncRNA upstream 30295 81150765 ~ 81154590 (+) True G928741
TU1057320 lncRNA upstream 49380 81133594 ~ 81135505 (+) True G928736
TU1057309 lncRNA upstream 66963 81116610 ~ 81117922 (+) True G928728
TU1057306 lncRNA upstream 69726 81114721 ~ 81115159 (+) True G928726
TU1057302 lncRNA upstream 76926 81100894 ~ 81107959 (+) True G928722
TU1057455 lncRNA downstream 9785 81323533 ~ 81353606 (+) True G928840
TU1057456 lncRNA downstream 15264 81329012 ~ 81426368 (+) True G928841
TU1057255 lncRNA downstream 25985 81339733 ~ 81340699 (+) False G928704
TU1057257 lncRNA downstream 25985 81339733 ~ 81436602 (+) False G928704
TU1057259 lncRNA downstream 25985 81339733 ~ 81436602 (+) False G928704
XM_036934161.1 mRNA upstream 170634 80942545 ~ 81014251 (+) False LOC110514786
XR_005034258.1 mRNA upstream 248824 80935213 ~ 80936061 (+) False LOC118936804
trnae-cuc-165 mRNA upstream 254718 80930096 ~ 80930167 (+) True trnae-cuc-165
XM_036934159.1 mRNA upstream 262247 80866988 ~ 80922638 (+) False LOC110515606
XM_036934170.1 mRNA downstream 59835 81373583 ~ 81386366 (+) False LOC110510686
XM_036934187.1 mRNA downstream 172848 81486596 ~ 81506153 (+) False LOC110518956
XR_005034263.1 mRNA downstream 189461 81503209 ~ 81504564 (+) False LOC118936817
XR_005034264.1 mRNA downstream 189461 81503209 ~ 81504564 (+) False LOC118936817
XM_036934189.1 mRNA downstream 212766 81526514 ~ 81534991 (+) False LOC110513527
TU1057314 other upstream 64008 81119565 ~ 81120877 (+) False G928731
TU1057315 other upstream 64639 81119565 ~ 81120246 (+) True G928731
TU1057129 other upstream 354230 80821664 ~ 80830655 (+) False LOC110515606
TU1056700 other upstream 868316 80311944 ~ 80316569 (+) True G928335
TU1056528 other upstream 1156666 80027002 ~ 80028219 (+) True G928206
TU1057354 other downstream 35788 81349536 ~ 81350331 (+) True G928765
TU1057347 other downstream 68461 81382209 ~ 81383375 (+) True LOC110510686
TU1057519 other downstream 190927 81504675 ~ 81506482 (+) True LOC110518956
TU1057527 other downstream 213000 81526748 ~ 81529882 (+) True LOC110513527
TU1057514 other downstream 265637 81579385 ~ 81595737 (+) False LOC118936818

Expression Profile