RNA id: TU1057296


Basic Information

Item Value
RNA id TU1057296
length 482
lncRNA type intronic
GC content 0.42
exon number 2
gene id G928717
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81080994 ~ 81085639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctactatagaccagagccctattccctatatagtggtactactatagaccagagccctattccctatatagtggtactactatagaccagagccctattccctatatagtggtactactatagaccagagccctattccctatatagtacactactatagacccgagccctattccctatatagtggtactactatagaccagagccctattccctatatagtacactactatagaccagagccctattccctatatggtggtactactatagaccagagccctattccctatatagtggtactactatagaccagagccctattccctatatagtggtactactatagaccagagccctattccctatatagtggtactactatagaccagagccctattccctatatagtggtactactatagaccagagccctattccctatatattggtactactatagaccagagccctattcccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057282 lncRNA upstream 3971 81073076 ~ 81077023 (+) True G928713
TU1057280 lncRNA upstream 5739 81073076 ~ 81075255 (+) False G928713
TU1057250 lncRNA upstream 16830 81063706 ~ 81064164 (+) True G928701
TU1057246 lncRNA upstream 20076 81060576 ~ 81060918 (+) True G928697
TU1057241 lncRNA upstream 36012 81044379 ~ 81044982 (+) True G928692
TU1057302 lncRNA downstream 15255 81100894 ~ 81107959 (+) True G928722
TU1057306 lncRNA downstream 29082 81114721 ~ 81115159 (+) True G928726
TU1057309 lncRNA downstream 30971 81116610 ~ 81117922 (+) True G928728
TU1057320 lncRNA downstream 47955 81133594 ~ 81135505 (+) True G928736
TU1057326 lncRNA downstream 65126 81150765 ~ 81154590 (+) True G928741
XM_036934161.1 mRNA upstream 66743 80942545 ~ 81014251 (+) False LOC110514786
XR_005034258.1 mRNA upstream 144933 80935213 ~ 80936061 (+) False LOC118936804
trnae-cuc-165 mRNA upstream 150827 80930096 ~ 80930167 (+) True trnae-cuc-165
XM_036934159.1 mRNA upstream 158356 80866988 ~ 80922638 (+) False LOC110515606
XM_036934174.1 mRNA downstream 132336 81217975 ~ 81220397 (+) True LOC110530284
XM_036934178.1 mRNA downstream 155995 81241634 ~ 81247351 (+) False LOC118936811
XM_036934177.1 mRNA downstream 156000 81241639 ~ 81247351 (+) False LOC118936811
XM_036934170.1 mRNA downstream 287944 81373583 ~ 81386366 (+) False LOC110510686
XM_036934187.1 mRNA downstream 400957 81486596 ~ 81506153 (+) False LOC110518956
TU1057129 other upstream 250339 80821664 ~ 80830655 (+) False LOC110515606
TU1056700 other upstream 764425 80311944 ~ 80316569 (+) True G928335
TU1056528 other upstream 1052775 80027002 ~ 80028219 (+) True G928206
TU1055948 other upstream 1323950 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 1480222 79597645 ~ 79600772 (+) True LOC110514189
TU1057314 other downstream 33926 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 33926 81119565 ~ 81120246 (+) True G928731
TU1057265 other downstream 99246 81184885 ~ 81313748 (+) False G928705
TU1057333 other downstream 153458 81239097 ~ 81242550 (+) False LOC118936811
TU1057339 other downstream 157455 81243094 ~ 81245826 (+) False LOC118936811

Expression Profile