RNA id: TU1057309


Basic Information

Item Value
RNA id TU1057309
length 660
lncRNA type intronic
GC content 0.40
exon number 2
gene id G928728
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81116610 ~ 81117922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctgggatttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctgggatttattaggatcattatctgtttctaaagcagcaggtactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctgggatttattcggatcattatctgtttctaaagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagctactcttcctggggtttattaggatcattatctgtttctatagcagcagcttctcttcctggggtttattaggataattatctgtttctatagcagcagcttctcttcctggggtttattgggatcattatctgtttctatagcagcagctactcttcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057306 lncRNA upstream 1451 81114721 ~ 81115159 (+) True G928726
TU1057302 lncRNA upstream 8651 81100894 ~ 81107959 (+) True G928722
TU1057288 lncRNA upstream 17156 81079141 ~ 81099454 (+) True G928715
TU1057296 lncRNA upstream 30971 81080994 ~ 81085639 (+) True G928717
TU1057282 lncRNA upstream 39587 81073076 ~ 81077023 (+) True G928713
TU1057320 lncRNA downstream 15672 81133594 ~ 81135505 (+) True G928736
TU1057326 lncRNA downstream 32843 81150765 ~ 81154590 (+) True G928741
TU1057264 lncRNA downstream 66963 81184885 ~ 81312003 (+) False G928705
TU1057360 lncRNA downstream 71493 81189415 ~ 81407283 (+) True G928771
TU1057382 lncRNA downstream 73627 81191549 ~ 81192117 (+) True G928781
XM_036934161.1 mRNA upstream 102359 80942545 ~ 81014251 (+) False LOC110514786
XR_005034258.1 mRNA upstream 180549 80935213 ~ 80936061 (+) False LOC118936804
trnae-cuc-165 mRNA upstream 186443 80930096 ~ 80930167 (+) True trnae-cuc-165
XM_036934159.1 mRNA upstream 193972 80866988 ~ 80922638 (+) False LOC110515606
XM_036934174.1 mRNA downstream 100053 81217975 ~ 81220397 (+) True LOC110530284
XM_036934178.1 mRNA downstream 123712 81241634 ~ 81247351 (+) False LOC118936811
XM_036934177.1 mRNA downstream 123717 81241639 ~ 81247351 (+) False LOC118936811
XM_036934170.1 mRNA downstream 255661 81373583 ~ 81386366 (+) False LOC110510686
XM_036934187.1 mRNA downstream 368674 81486596 ~ 81506153 (+) False LOC110518956
TU1057129 other upstream 285955 80821664 ~ 80830655 (+) False LOC110515606
TU1056700 other upstream 800041 80311944 ~ 80316569 (+) True G928335
TU1056528 other upstream 1088391 80027002 ~ 80028219 (+) True G928206
TU1055948 other upstream 1359566 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 1515838 79597645 ~ 79600772 (+) True LOC110514189
TU1057314 other downstream 1643 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 1643 81119565 ~ 81120246 (+) True G928731
TU1057265 other downstream 66963 81184885 ~ 81313748 (+) False G928705
TU1057333 other downstream 121175 81239097 ~ 81242550 (+) False LOC118936811
TU1057339 other downstream 125172 81243094 ~ 81245826 (+) False LOC118936811

Expression Profile