RNA id: TU1057326


Basic Information

Item Value
RNA id TU1057326
length 1599
lncRNA type antisense_over
GC content 0.41
exon number 6
gene id G928741
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81150765 ~ 81154590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcatgatgatgtactggtcgatctaactatagctagactattcatgatgatgtactggttgatctaactatagctagactattcatgatgatgtactggttgatctattcatgacgatgtactggttgatctaactatagctagactattcatgatgatgtactggttgatctattcatgacgatgtactggttgatctattcatgatgatgcactggttgatctaactatagctagactattcatgatgatgtactggttgatctaactatagctagactattcatggtgatgtactggttgatctattcatgacgatgtactggttgatctaactatagctagactattcatgatgatgtactggttgatctattcatggtgatgtactggttgatctattcatgatgatgtactggttgatctattcatgatgatgtactggttgatctattcatggtgatgtactggttgatctattcatggtgatgtactggttgatctattcatggtgatgtactggttgatctaactatagctagactattcatgatgatgtactggttgatctaactatagctagactattcatggtgatgtactggttgatctaactatagctagactattcatggtgatgtactggttgatctattcatgATGACGTACCTGTTAATCTAACTATAGCTAGACGGGTTGTTTTTGAAGTGCTCTGAGATTCTTATGAAAAGTGCAATAGAAACGTGATGCATTATTCTTGTTATTATTTTGGTGTCTCCTCTGTGATTAATCACACAGTCAGTGGTCCATACATCACGTTCATAAATCACTTTATAGAGACAGATATCACACCttagatgacacacacacacaccttagataacacacacaccttagataacacacacacacacaccttagataacacacacacacacaccttcgatACAGccatatgaaataacacacacctgACTGCGAGAAAGAACTGGAAGACAGTGatatagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcctacctGGCGTCAGCCTCACTGTAGTACTCCCTGGCTACGATGTCCTCAAACAGCTCTCCTCCAGTCACCctgaaaacacacagacacacagacagacacacagacacacacacagacagacagacacacacacagacacacacacagacacacagacacacagacacacagacagatacagacacatacacacacagacagacacacagacacagacacacagacacacacagacacacacacaggcacacagaaaaacagacacacacagaaacacacagacacacagagacacacaccaagGTGGTTTACCTCtctagtgtgtgtctgtggtttaGCACTAGTTATTATTCCTGACAAAACCAGCACCTGTCATCCCTGGATCAGTACCTGGATCTACACTtactgagagatggagggatgagatacACATAGATATGAGAGGTGTACTCACAGATCAAACAGCAGGAAGTGGAAGCCCTCCTCTAATATGAGAGGTAGAGGTGTACTCACAGATCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057320 lncRNA upstream 15260 81133594 ~ 81135505 (+) True G928736
TU1057309 lncRNA upstream 32843 81116610 ~ 81117922 (+) True G928728
TU1057306 lncRNA upstream 35606 81114721 ~ 81115159 (+) True G928726
TU1057302 lncRNA upstream 42806 81100894 ~ 81107959 (+) True G928722
TU1057288 lncRNA upstream 51311 81079141 ~ 81099454 (+) True G928715
TU1057264 lncRNA downstream 30295 81184885 ~ 81312003 (+) False G928705
TU1057360 lncRNA downstream 34825 81189415 ~ 81407283 (+) True G928771
TU1057382 lncRNA downstream 36959 81191549 ~ 81192117 (+) True G928781
TU1057404 lncRNA downstream 56005 81210595 ~ 81211246 (+) True G928799
TU1057406 lncRNA downstream 56903 81211493 ~ 81212714 (+) True G928800
XM_036934161.1 mRNA upstream 136514 80942545 ~ 81014251 (+) False LOC110514786
XR_005034258.1 mRNA upstream 214704 80935213 ~ 80936061 (+) False LOC118936804
trnae-cuc-165 mRNA upstream 220598 80930096 ~ 80930167 (+) True trnae-cuc-165
XM_036934159.1 mRNA upstream 228127 80866988 ~ 80922638 (+) False LOC110515606
XM_036934174.1 mRNA downstream 63385 81217975 ~ 81220397 (+) True LOC110530284
XM_036934178.1 mRNA downstream 87044 81241634 ~ 81247351 (+) False LOC118936811
XM_036934177.1 mRNA downstream 87049 81241639 ~ 81247351 (+) False LOC118936811
XM_036934170.1 mRNA downstream 218993 81373583 ~ 81386366 (+) False LOC110510686
XM_036934187.1 mRNA downstream 332006 81486596 ~ 81506153 (+) False LOC110518956
TU1057314 other upstream 29888 81119565 ~ 81120877 (+) False G928731
TU1057315 other upstream 30519 81119565 ~ 81120246 (+) True G928731
TU1057129 other upstream 320110 80821664 ~ 80830655 (+) False LOC110515606
TU1056700 other upstream 834196 80311944 ~ 80316569 (+) True G928335
TU1056528 other upstream 1122546 80027002 ~ 80028219 (+) True G928206
TU1057265 other downstream 30295 81184885 ~ 81313748 (+) False G928705
TU1057333 other downstream 84507 81239097 ~ 81242550 (+) False LOC118936811
TU1057339 other downstream 88504 81243094 ~ 81245826 (+) False LOC118936811
TU1057346 other downstream 122449 81277039 ~ 81330349 (+) True G928757
TU1057354 other downstream 194946 81349536 ~ 81350331 (+) True G928765

Expression Profile