RNA id: TU1057406


Basic Information

Item Value
RNA id TU1057406
length 409
lncRNA type intronic
GC content 0.38
exon number 5
gene id G928800
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81211493 ~ 81212714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atccattatattgaccaggtactatagtggctGCTCTATCAGATTATCCATTATAatgaccaggtactatagtggctGCTATAtcagattatccattatattgaccaggtactatagtggctGCTATATCAGagtatccattatattgaccaggtactatagtggctGCTGTAtcagattatccattatattgaccaggtactatagtggctGCTGTATCAGagtatccattatattgaccaggtactatagtATAGGCTCTAtcagattatccattatattgaccaggtactatagtggctGCTCTATCAGATTACCCATGATattgaccaggtactatagtggctGCTCTATCAGATTAcccattatattgaccaggtactatagtggctGCTGTATCAGATTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057404 lncRNA upstream 247 81210595 ~ 81211246 (+) True G928799
TU1057382 lncRNA upstream 19376 81191549 ~ 81192117 (+) True G928781
TU1057326 lncRNA upstream 56903 81150765 ~ 81154590 (+) True G928741
TU1057320 lncRNA upstream 75988 81133594 ~ 81135505 (+) True G928736
TU1057309 lncRNA upstream 93571 81116610 ~ 81117922 (+) True G928728
TU1057352 lncRNA downstream 9471 81222185 ~ 81222608 (+) True G928763
TU1057412 lncRNA downstream 15817 81228531 ~ 81235627 (+) True G928805
TU1057415 lncRNA downstream 31407 81244121 ~ 81244714 (+) True G928808
TU1057351 lncRNA downstream 33426 81246140 ~ 81247334 (+) True LOC118936811
TU1057417 lncRNA downstream 35670 81248384 ~ 81248919 (+) True G928810
XM_036934161.1 mRNA upstream 197242 80942545 ~ 81014251 (+) False LOC110514786
XR_005034258.1 mRNA upstream 275432 80935213 ~ 80936061 (+) False LOC118936804
trnae-cuc-165 mRNA upstream 281326 80930096 ~ 80930167 (+) True trnae-cuc-165
XM_036934159.1 mRNA upstream 288855 80866988 ~ 80922638 (+) False LOC110515606
XM_036934174.1 mRNA downstream 5261 81217975 ~ 81220397 (+) True LOC110530284
XM_036934178.1 mRNA downstream 28920 81241634 ~ 81247351 (+) False LOC118936811
XM_036934177.1 mRNA downstream 28925 81241639 ~ 81247351 (+) False LOC118936811
XM_036934170.1 mRNA downstream 160869 81373583 ~ 81386366 (+) False LOC110510686
XM_036934187.1 mRNA downstream 273882 81486596 ~ 81506153 (+) False LOC110518956
TU1057314 other upstream 90616 81119565 ~ 81120877 (+) False G928731
TU1057315 other upstream 91247 81119565 ~ 81120246 (+) True G928731
TU1057129 other upstream 380838 80821664 ~ 80830655 (+) False LOC110515606
TU1056700 other upstream 894924 80311944 ~ 80316569 (+) True G928335
TU1056528 other upstream 1183274 80027002 ~ 80028219 (+) True G928206
TU1057333 other downstream 26383 81239097 ~ 81242550 (+) False LOC118936811
TU1057339 other downstream 30380 81243094 ~ 81245826 (+) False LOC118936811
TU1057346 other downstream 64325 81277039 ~ 81330349 (+) True G928757
TU1057354 other downstream 136822 81349536 ~ 81350331 (+) True G928765
TU1057347 other downstream 169495 81382209 ~ 81383375 (+) True LOC110510686

Expression Profile