RNA id: TU1057417


Basic Information

Item Value
RNA id TU1057417
length 276
lncRNA type intronic
GC content 0.36
exon number 2
gene id G928810
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81248384 ~ 81248919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggtgatagtgtcagatattgaatagaggtgatagtgtcagatattgaatagaggtgctagtgtcagatattgaatagaggtgatagtgtcagatattgaatacaACCAAAAGGTTGTATTTGTCTCACTCAGTTGTGGTTTGATGTGTAAAAATGTAAACATATCTACAAATAGAGGACCATTAGGACAATTCAAGTTGATTCATCAATGACAAATATACTTCATATTAGTAGTCAATACTCACCAATAAGCCATCCGTCCTCAACAGCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057351 lncRNA upstream 1050 81246140 ~ 81247334 (+) True LOC118936811
TU1057415 lncRNA upstream 3670 81244121 ~ 81244714 (+) True G928808
TU1057412 lncRNA upstream 12757 81228531 ~ 81235627 (+) True G928805
TU1057352 lncRNA upstream 25776 81222185 ~ 81222608 (+) True G928763
TU1057406 lncRNA upstream 35670 81211493 ~ 81212714 (+) True G928800
TU1057268 lncRNA downstream 5723 81254642 ~ 81257090 (+) False G928706
TU1057269 lncRNA downstream 5723 81254642 ~ 81257090 (+) True G928706
TU1057425 lncRNA downstream 14337 81263256 ~ 81295061 (+) False G928817
TU1057426 lncRNA downstream 14337 81263256 ~ 81294862 (+) True G928817
TU1057383 lncRNA downstream 14523 81263442 ~ 81352839 (+) False G928782
XM_036934178.1 mRNA upstream 1033 81241634 ~ 81247351 (+) False LOC118936811
XM_036934177.1 mRNA upstream 1033 81241639 ~ 81247351 (+) False LOC118936811
XM_036934174.1 mRNA upstream 27987 81217975 ~ 81220397 (+) True LOC110530284
XM_036934161.1 mRNA upstream 234133 80942545 ~ 81014251 (+) False LOC110514786
XR_005034258.1 mRNA upstream 312323 80935213 ~ 80936061 (+) False LOC118936804
XM_036934170.1 mRNA downstream 124664 81373583 ~ 81386366 (+) False LOC110510686
XM_036934187.1 mRNA downstream 237677 81486596 ~ 81506153 (+) False LOC110518956
XR_005034263.1 mRNA downstream 254290 81503209 ~ 81504564 (+) False LOC118936817
XR_005034264.1 mRNA downstream 254290 81503209 ~ 81504564 (+) False LOC118936817
XM_036934189.1 mRNA downstream 277595 81526514 ~ 81534991 (+) False LOC110513527
TU1057339 other upstream 2558 81243094 ~ 81245826 (+) False LOC118936811
TU1057333 other upstream 5834 81239097 ~ 81242550 (+) False LOC118936811
TU1057314 other upstream 127507 81119565 ~ 81120877 (+) False G928731
TU1057315 other upstream 128138 81119565 ~ 81120246 (+) True G928731
TU1057129 other upstream 417729 80821664 ~ 80830655 (+) False LOC110515606
TU1057346 other downstream 28120 81277039 ~ 81330349 (+) True G928757
TU1057354 other downstream 100617 81349536 ~ 81350331 (+) True G928765
TU1057347 other downstream 133290 81382209 ~ 81383375 (+) True LOC110510686
TU1057519 other downstream 255756 81504675 ~ 81506482 (+) True LOC110518956
TU1057527 other downstream 277829 81526748 ~ 81529882 (+) True LOC110513527

Expression Profile