RNA id: TU1057426


Basic Information

Item Value
RNA id TU1057426
length 210
lncRNA type read_through
GC content 0.56
exon number 2
gene id G928817
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81263256 ~ 81295061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctcaggtccaggcttgatccaacactctccaccatggtctctggtgttctCAGgtccaggcttggtccaactctctccacgatggtctctggtgttctcaggtccaggcttggtccaactctctccaccatggtctctggtgttctcaggtccaggcttggtccaactctctccaccatggtctctggtgtcctcaggtccaggcttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057268 lncRNA upstream 6166 81254642 ~ 81257090 (+) False G928706
TU1057269 lncRNA upstream 6166 81254642 ~ 81257090 (+) True G928706
TU1057417 lncRNA upstream 14337 81248384 ~ 81248919 (+) True G928810
TU1057351 lncRNA upstream 15922 81246140 ~ 81247334 (+) True LOC118936811
TU1057415 lncRNA upstream 18542 81244121 ~ 81244714 (+) True G928808
TU1057384 lncRNA downstream 1177 81296039 ~ 81352839 (+) True G928782
TU1057386 lncRNA downstream 1770 81296632 ~ 81323503 (+) True G928783
TU1057441 lncRNA downstream 3505 81298367 ~ 81354229 (+) True G928830
TU1057455 lncRNA downstream 28671 81323533 ~ 81353606 (+) True G928840
TU1057456 lncRNA downstream 34150 81329012 ~ 81426368 (+) True G928841
XM_036934178.1 mRNA upstream 15905 81241634 ~ 81247351 (+) False LOC118936811
XM_036934177.1 mRNA upstream 15905 81241639 ~ 81247351 (+) False LOC118936811
XM_036934174.1 mRNA upstream 42859 81217975 ~ 81220397 (+) True LOC110530284
XM_036934161.1 mRNA upstream 249005 80942545 ~ 81014251 (+) False LOC110514786
XR_005034258.1 mRNA upstream 327195 80935213 ~ 80936061 (+) False LOC118936804
XM_036934170.1 mRNA downstream 78721 81373583 ~ 81386366 (+) False LOC110510686
XM_036934187.1 mRNA downstream 191734 81486596 ~ 81506153 (+) False LOC110518956
XR_005034263.1 mRNA downstream 208347 81503209 ~ 81504564 (+) False LOC118936817
XR_005034264.1 mRNA downstream 208347 81503209 ~ 81504564 (+) False LOC118936817
XM_036934189.1 mRNA downstream 231652 81526514 ~ 81534991 (+) False LOC110513527
TU1057339 other upstream 17430 81243094 ~ 81245826 (+) False LOC118936811
TU1057333 other upstream 20706 81239097 ~ 81242550 (+) False LOC118936811
TU1057314 other upstream 142379 81119565 ~ 81120877 (+) False G928731
TU1057315 other upstream 143010 81119565 ~ 81120246 (+) True G928731
TU1057129 other upstream 432601 80821664 ~ 80830655 (+) False LOC110515606
TU1057354 other downstream 54674 81349536 ~ 81350331 (+) True G928765
TU1057347 other downstream 87347 81382209 ~ 81383375 (+) True LOC110510686
TU1057519 other downstream 209813 81504675 ~ 81506482 (+) True LOC110518956
TU1057527 other downstream 231886 81526748 ~ 81529882 (+) True LOC110513527
TU1057514 other downstream 284523 81579385 ~ 81595737 (+) False LOC118936818

Expression Profile