RNA id: TU1057275


Basic Information

Item Value
RNA id TU1057275
length 2848
lncRNA type read_through
GC content 0.45
exon number 2
gene id G928709
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81286535 ~ 81316479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaccaggctaatctacatcacgtcctggaggagatgtcattggggcattcagaaccaggctaatctacatcacgtcctggaggagatgtcattggggcattcagaaccaggctaatctacatcaagtcctggaggagatgtcattggggcattcagaaccaggctaatctacatcaactcctggaggagatgtcattggggcattcagaaccaggctgatctacatcaagtcctggaggagatgtcattggggcattcagaaccaggctaatctacatcacgtcctggaggagatgtcattgggacattcagaaccaggctaatctacatcaagtcctggaggagatgttattggggcattcagaaccaggctaatctacatcaagtcctggaggagatgtcattgTTCTTGAAGACAGTCTTTTATAATCAGGACTAGTCCAGGTCCTACAGTAAACCATGTTGACTGACCCTCAAGTCATTGGTTTGTATCTCTCATGTTTACTTACTAGTTGAATGGGTTTCAGTGATGAATTCATCTGAAATAAACATACATTGGTTATATCACTAAATAGTATCTGTCAGAAAAAGTTGTGATTGACATGTTCTCCTACATTTTTGTACAGTTTCTTTCCATACTATCCTCTCATCATCACCGATTAACTCCATCTCAATCCCTGTAATTTCCATATCCACCTTGAAAAAGCTTGGTGTGGTGTCTCTATGTATGAGATGAATcctctggggggagggagggagagagagcgagagaggttaaACAAAAACATGGTTAAACATTAATTAAAAACACAACACCAAATCTTCCGCCACAGTAACTAAAAACAACAGCCTCTAAATACCCCATATACTCAAACAGATCAATGTTAACCATTTTGTAACAGGCAAACTCAACCCTCAGTCTGGCTGCCAACATCCCCTCCAGCATTCCCACCACGTCCACAGTCCCCTGTTCCCGAATACTGTTCTTTCATGTCTATCAAATTGATAATTTAGCTGCCCCTGACACAAAGTTAAGTAAGAGAACAACACCCCTTCTACTAAACCTGTACTTTGTCCCAAATATAAACATTTGGGAAGAAAAAACCTCTCCCAGAGCTGAGAACCAACCAGTGATCAGGTCAATCATCTCGACCAACCTGGGACACTGTAAGAACAGATGTGTCAGAGTTTCAGACTCAgcacagaatggacacccctccccaacatgGTGAAAACTCTCCAAGCCTGTATAATAGACTTATAGAATGGAGTCAGACCAGacaaatcaccccccccccccctccagcttTAAGAGGAAACTCTCCAAGCCTGCATAACAGACTCATAGAATGGAGTCAGGCCAGACAAATCACCCCCCTCCATCTTTAAGAGGAAAAGTTGCTTGTCTAAGCAAAACAGCCTGCTCTCCTCATCAATGTGTCGGCTGTATCCACCCAGCTAGAACCGTCacagtacaacagtctctgggctgcatGAAGCCAGAAAGCCATGATCCAAGAAGAGATGTCCACCAGGCCTTGTGTAACAGTTTAGACTTTACACCCATcccctcgccccaacctgggcgcgaaccagggacgctctgcacacgtcaacagtcaccctcttggcatcgttacccatcgccccacataagccgtggcccttgcagagcaaggggaaccactacttcaaggtcttagagcaagtgacgtcactgattgaaatgctattagcgcgcaccaccgctaactagctagccatttcacaccggttacactcacctcccttttgacctcctccttttccgcagcaaccagtgatccgggtcacggcaccaatgtaacagtttaactttagacaatatatcagtcctgaaattgggcatccctgcctgatgCCCCTTTGGATGGGGATGGGGCAGCTCAACCCACCCTCCCCATACACGAGGCCCCAGCAGACAGTAAACTCAtccaagacaaaaaaaacatccccaaacccaaAGGCTTTCATTGTTTTAAACATGGTGGTCCACACGATCAAAAGCCTTCTTCATTCTATATACCTGTTTGAGAGACACGTAGATATCATTTAAAATTCTGCACACAGCAATGCAACAAGTTGGCAGTTTTTTTTAAAAGGGCCAAATCCCCCCCCTTTTGCAACAATGAAAGCACAACACGTTgacaggatacaggaagagaaTACTCATGACAAGATTCACACACCACTTCATAAAAATCCCCCCCAATAGACAGCTGGGGTAGCACCCCAGTGCTTATAGAACTCAGATTGTAAAACATTGATGCCAGGGGCTCCGGGGTCCATCTGAGTGAGCAACTTCAATTCAATAGATGTGATGTCCTGTTTAAGGGCCCTGATAGTCTCTTTAACTCAATACTAGACGgagcagtatactgttgacaaGACACACGTATTTGGGCCTTCCCAACCACCCACCATTGTCTCAAGGATTCAAAATTCAAATTAATAACCCTCAATTTTTCCCAAAACACCAAAAACCTTTCCCAAAACATTGCGTCATGTAATATCTTCATGTTGAAATACCATGACAAGTGAATATCAACAGTAACAATATGGTGATCAGAAAAACCCTCAGGAGTAATGTCACCTTACAACCCTActgcagtagtgatcagatacatacaacctgtttAACCTTGCTGCACCGACACCACCTTCATTAACTACTACAGTAGAGCTCAGAtaatacaacctgtctaaccttgctgcaccgacaccaccttcattaaatactacagtagagctcagatacatacaacctgtctaaccttgctgcagcgacaccaccttcattaactactac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057268 lncRNA upstream 29445 81254642 ~ 81257090 (+) False G928706
TU1057269 lncRNA upstream 29445 81254642 ~ 81257090 (+) True G928706
TU1057417 lncRNA upstream 37616 81248384 ~ 81248919 (+) True G928810
TU1057351 lncRNA upstream 39201 81246140 ~ 81247334 (+) True LOC118936811
TU1057415 lncRNA upstream 41821 81244121 ~ 81244714 (+) True G928808
TU1057455 lncRNA downstream 7054 81323533 ~ 81353606 (+) True G928840
TU1057456 lncRNA downstream 12533 81329012 ~ 81426368 (+) True G928841
TU1057255 lncRNA downstream 23254 81339733 ~ 81340699 (+) False G928704
TU1057257 lncRNA downstream 23254 81339733 ~ 81436602 (+) False G928704
TU1057259 lncRNA downstream 23254 81339733 ~ 81436602 (+) False G928704
XM_036934178.1 mRNA upstream 39184 81241634 ~ 81247351 (+) False LOC118936811
XM_036934177.1 mRNA upstream 39184 81241639 ~ 81247351 (+) False LOC118936811
XM_036934174.1 mRNA upstream 66138 81217975 ~ 81220397 (+) True LOC110530284
XM_036934161.1 mRNA upstream 272284 80942545 ~ 81014251 (+) False LOC110514786
XR_005034258.1 mRNA upstream 350474 80935213 ~ 80936061 (+) False LOC118936804
XM_036934170.1 mRNA downstream 57104 81373583 ~ 81386366 (+) False LOC110510686
XM_036934187.1 mRNA downstream 170117 81486596 ~ 81506153 (+) False LOC110518956
XR_005034263.1 mRNA downstream 186730 81503209 ~ 81504564 (+) False LOC118936817
XR_005034264.1 mRNA downstream 186730 81503209 ~ 81504564 (+) False LOC118936817
XM_036934189.1 mRNA downstream 210035 81526514 ~ 81534991 (+) False LOC110513527
TU1057339 other upstream 40709 81243094 ~ 81245826 (+) False LOC118936811
TU1057333 other upstream 43985 81239097 ~ 81242550 (+) False LOC118936811
TU1057314 other upstream 165658 81119565 ~ 81120877 (+) False G928731
TU1057315 other upstream 166289 81119565 ~ 81120246 (+) True G928731
TU1057129 other upstream 455880 80821664 ~ 80830655 (+) False LOC110515606
TU1057354 other downstream 33057 81349536 ~ 81350331 (+) True G928765
TU1057347 other downstream 65730 81382209 ~ 81383375 (+) True LOC110510686
TU1057519 other downstream 188196 81504675 ~ 81506482 (+) True LOC110518956
TU1057527 other downstream 210269 81526748 ~ 81529882 (+) True LOC110513527
TU1057514 other downstream 262906 81579385 ~ 81595737 (+) False LOC118936818

Expression Profile