RNA id: TU1057257


Basic Information

Item Value
RNA id TU1057257
length 963
lncRNA type read_through
GC content 0.42
exon number 4
gene id G928704
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81339733 ~ 81436602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcgcaggaaaggttttcatcttcAGCTCACAATATGTGGATACTATACGATTAGAAAGATTCAAACAGTAAAACATCACAGCTCAATAAAGAATATATATGgcacatgtgtgtgtatacatgtatatgtatgtatgtgtagtaAAAAAAGCTGTGGAAAAAAACTAAGAGATGTGTCCTCTGAAGAGGGTGGTGGAGGTTGCTGCATTTTTTGACAAAAGATTTACAGCCCAGTcagatcaggggtgtattcattagtcaccCACAGTAGCACAGCGTTTTGAAAACAAAATAGTTGTTGCAAATAGTtggatttttttatattttggacaaattcaggtaggtccctaccctgttttgggggggggggggggaagcattCAGGGTAAAACATTGAATAGGCGTGTTGATCTAGGAGTAGGTCTAACCAGTCCATATGATTCCAATTATTATTCTTATATTCAATGTTTTTACACAACACTGTGTCTCCATAACATTTGTacagttatttttgtattttggtaccccaacactgttactatctattctaccattaggttggtaccctAACACTGTAACTATctattctaccattaggttgatACCCCAACACTGTAACTATctattctaccattaggttggtaccctAACATTGATCTGAAGCTGTGAACAAAGACATTGGTCCAGCTCCCCAAGAAGGTTGATCATCCTGGAACACGACTCAGTTCCTTTTCTCAACACCATGTCGATGATGTCACGTGCCTTCTCTGCCCTCTCAGCGATCACCTTCACTGACTCCATTTCCTCCTGGTTGATGACTGTGTGTTGCAGGAGTCTTTCCAGAAGACCATCCAGGACAGGTCTTGACACTCGTTTCACAAACTCCGTCCGTACAGAACGCAGCTGCTGCTCTGCAGAACCAGTCAGACTGCTCTCAGCCGGACGCCCTGCCCCCAACACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057386 lncRNA upstream 16230 81296632 ~ 81323503 (+) True G928783
TU1057435 lncRNA upstream 22794 81289922 ~ 81316939 (+) True G928826
TU1057275 lncRNA upstream 23254 81286535 ~ 81316479 (+) True G928709
TU1057266 lncRNA upstream 25985 81283626 ~ 81313748 (+) False G928705
TU1057264 lncRNA upstream 27730 81184885 ~ 81312003 (+) False G928705
TU1057513 lncRNA downstream 16809 81453411 ~ 81453725 (+) True G928868
TU1057530 lncRNA downstream 19950 81456552 ~ 81457073 (+) True G928882
TU1057531 lncRNA downstream 21134 81457736 ~ 81457950 (+) True G928883
TU1057533 lncRNA downstream 31128 81467730 ~ 81469707 (+) False G928885
TU1057534 lncRNA downstream 31128 81467730 ~ 81469858 (+) True G928885
XM_036934178.1 mRNA upstream 92382 81241634 ~ 81247351 (+) False LOC118936811
XM_036934177.1 mRNA upstream 92382 81241639 ~ 81247351 (+) False LOC118936811
XM_036934174.1 mRNA upstream 119336 81217975 ~ 81220397 (+) True LOC110530284
XM_036934161.1 mRNA upstream 325482 80942545 ~ 81014251 (+) False LOC110514786
XR_005034258.1 mRNA upstream 403672 80935213 ~ 80936061 (+) False LOC118936804
XM_036934187.1 mRNA downstream 49994 81486596 ~ 81506153 (+) False LOC110518956
XR_005034263.1 mRNA downstream 66607 81503209 ~ 81504564 (+) False LOC118936817
XR_005034264.1 mRNA downstream 66607 81503209 ~ 81504564 (+) False LOC118936817
XM_036934189.1 mRNA downstream 89912 81526514 ~ 81534991 (+) False LOC110513527
XM_036934190.1 mRNA downstream 89912 81526514 ~ 81534991 (+) False LOC110513527
TU1057346 other upstream 9384 81277039 ~ 81330349 (+) True G928757
TU1057265 other upstream 25985 81184885 ~ 81313748 (+) False G928705
TU1057339 other upstream 93907 81243094 ~ 81245826 (+) False LOC118936811
TU1057333 other upstream 97183 81239097 ~ 81242550 (+) False LOC118936811
TU1057315 other upstream 219487 81119565 ~ 81120246 (+) True G928731
TU1057519 other downstream 68073 81504675 ~ 81506482 (+) True LOC110518956
TU1057527 other downstream 90146 81526748 ~ 81529882 (+) True LOC110513527
TU1057514 other downstream 142783 81579385 ~ 81595737 (+) False LOC118936818
TU1057515 other downstream 158401 81595003 ~ 81595752 (+) False LOC118936818
TU1057517 other downstream 158401 81595003 ~ 81595737 (+) True LOC118936818

Expression Profile