RNA id: TU1057565


Basic Information

Item Value
RNA id TU1057565
length 262
lncRNA type intronic
GC content 0.41
exon number 2
gene id G928908
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81580948 ~ 81581611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaactggttattatagaacacaccatccaatgggacaaggtgataggactaatctaactggttgttataacacaccatccaatgggacaaggtgataggactaatctaactggttgttatagaacacaccatccaatgggacaaggtgataggactaatctaactggttgttatagaacacacCATCCAATGGGACAAGGGACAAGGTGATAGGACTAATCTAACtggttattatagaacacaccATCCAATGGGCAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057561 lncRNA upstream 23816 81556879 ~ 81557132 (+) True G928904
TU1057559 lncRNA upstream 24981 81554981 ~ 81555967 (+) True G928903
TU1057528 lncRNA upstream 27922 81552211 ~ 81553026 (+) True G928880
TU1057521 lncRNA upstream 39695 81540896 ~ 81541253 (+) True G928873
TU1057525 lncRNA upstream 40433 81539908 ~ 81540515 (+) True G928877
TU1057575 lncRNA downstream 14818 81596429 ~ 81596901 (+) True G928917
TU1057577 lncRNA downstream 16953 81598564 ~ 81599052 (+) True G928919
TU1057578 lncRNA downstream 25272 81606883 ~ 81607176 (+) True G928920
TU1057529 lncRNA downstream 34041 81615652 ~ 81616679 (+) True G928881
TU1057579 lncRNA downstream 35363 81616974 ~ 81617196 (+) True G928921
XM_036934189.1 mRNA upstream 45957 81526514 ~ 81534991 (+) False LOC110513527
XM_036934190.1 mRNA upstream 45957 81526514 ~ 81534991 (+) False LOC110513527
XM_036934187.1 mRNA upstream 74795 81486596 ~ 81506153 (+) False LOC110518956
XM_036934194.1 mRNA downstream 35849 81617460 ~ 81672338 (+) False LOC118936819
XR_005034268.1 mRNA downstream 100823 81682434 ~ 81685439 (+) False LOC118936820
XR_005034266.1 mRNA downstream 100825 81682436 ~ 81685439 (+) False LOC118936820
XR_005034269.1 mRNA downstream 100825 81682436 ~ 81685439 (+) False LOC118936820
XR_005034274.1 mRNA downstream 100825 81682436 ~ 81685439 (+) False LOC118936820
TU1057527 other upstream 51066 81526748 ~ 81529882 (+) True LOC110513527
TU1057519 other upstream 74466 81504675 ~ 81506482 (+) True LOC110518956
TU1057347 other upstream 197573 81382209 ~ 81383375 (+) True LOC110510686
TU1057354 other upstream 230617 81349536 ~ 81350331 (+) True G928765
TU1057346 other upstream 250599 81277039 ~ 81330349 (+) True G928757
TU1057515 other downstream 13392 81595003 ~ 81595752 (+) False LOC118936818
TU1057517 other downstream 13392 81595003 ~ 81595737 (+) True LOC118936818
TU1057571 other downstream 54127 81635738 ~ 81656508 (+) False LOC118936819
TU1057587 other downstream 71780 81653391 ~ 81654277 (+) False G928929
TU1057588 other downstream 71780 81653391 ~ 81654391 (+) True G928929

Expression Profile