RNA id: TU1057577


Basic Information

Item Value
RNA id TU1057577
length 449
lncRNA type intronic
GC content 0.43
exon number 2
gene id G928919
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81598564 ~ 81599052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctaaTCTGCTGtcatgactcttagagacttacccagaaagactcctagctgtaatgaatctcagagtcttacccagaaagactcccagctgtaattactcttagagacttacccagaaagactcccagctgtaatgactcctagagacttacccagaaagactcctagTTGTAATgactctcagagacttacccagaaagactcctagctgtaatgaatctcagagtcttacccagaaagactcccagctgtaatgactcttagagacttacccagaaagactcccagctgtaatgactcctagagacttacccagaaagactcctagTTGTAATgactctcagagacttacccagaaagactcacagctgtaatgaatctcagagtcttacctagaaagactcctagctgtaatgaatctcagagtcttacccagaaagactccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057575 lncRNA upstream 1663 81596429 ~ 81596901 (+) True G928917
TU1057565 lncRNA upstream 16953 81580948 ~ 81581611 (+) True G928908
TU1057561 lncRNA upstream 41432 81556879 ~ 81557132 (+) True G928904
TU1057559 lncRNA upstream 42597 81554981 ~ 81555967 (+) True G928903
TU1057528 lncRNA upstream 45538 81552211 ~ 81553026 (+) True G928880
TU1057578 lncRNA downstream 7831 81606883 ~ 81607176 (+) True G928920
TU1057529 lncRNA downstream 16600 81615652 ~ 81616679 (+) True G928881
TU1057579 lncRNA downstream 17922 81616974 ~ 81617196 (+) True G928921
TU1057581 lncRNA downstream 37616 81636668 ~ 81638559 (+) True G928923
TU1057582 lncRNA downstream 37890 81636942 ~ 81639155 (+) True G928924
XM_036934189.1 mRNA upstream 63573 81526514 ~ 81534991 (+) False LOC110513527
XM_036934190.1 mRNA upstream 63573 81526514 ~ 81534991 (+) False LOC110513527
XM_036934187.1 mRNA upstream 92411 81486596 ~ 81506153 (+) False LOC110518956
XM_036934194.1 mRNA downstream 18408 81617460 ~ 81672338 (+) False LOC118936819
XR_005034268.1 mRNA downstream 83382 81682434 ~ 81685439 (+) False LOC118936820
XR_005034266.1 mRNA downstream 83384 81682436 ~ 81685439 (+) False LOC118936820
XR_005034269.1 mRNA downstream 83384 81682436 ~ 81685439 (+) False LOC118936820
XR_005034274.1 mRNA downstream 83384 81682436 ~ 81685439 (+) False LOC118936820
TU1057515 other upstream 2812 81595003 ~ 81595752 (+) False LOC118936818
TU1057514 other upstream 2827 81579385 ~ 81595737 (+) False LOC118936818
TU1057517 other upstream 2827 81595003 ~ 81595737 (+) True LOC118936818
TU1057527 other upstream 68682 81526748 ~ 81529882 (+) True LOC110513527
TU1057519 other upstream 92082 81504675 ~ 81506482 (+) True LOC110518956
TU1057571 other downstream 36686 81635738 ~ 81656508 (+) False LOC118936819
TU1057587 other downstream 54339 81653391 ~ 81654277 (+) False G928929
TU1057588 other downstream 54339 81653391 ~ 81654391 (+) True G928929
TU1057598 other downstream 122181 81721233 ~ 81722841 (+) False LOC110514629
TU1057735 other downstream 349058 81948110 ~ 81961513 (+) True G929033

Expression Profile