RNA id: TU1057581


Basic Information

Item Value
RNA id TU1057581
length 271
lncRNA type intronic
GC content 0.47
exon number 3
gene id G928923
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81636668 ~ 81638559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGATCCATATTCTTtgggagtgatggaggtagatatgtataggagacagggatactggagtgatggaggtagatatgtatagggggaaggagactggGATAcaggagtgatggaggtagatatgtatagggggaaggagacagggatactggagtgatggaggtagatatgtataggggtaaggggatactggagtgatggaggtagatatgtatagggggaaggagacagggatactggagtgatggaggtagatatgtataggggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057579 lncRNA upstream 19472 81616974 ~ 81617196 (+) True G928921
TU1057529 lncRNA upstream 19989 81615652 ~ 81616679 (+) True G928881
TU1057578 lncRNA upstream 29492 81606883 ~ 81607176 (+) True G928920
TU1057577 lncRNA upstream 37616 81598564 ~ 81599052 (+) True G928919
TU1057575 lncRNA upstream 39767 81596429 ~ 81596901 (+) True G928917
TU1057572 lncRNA downstream 17373 81655932 ~ 81656508 (+) True LOC118936819
TU1057570 lncRNA downstream 39269 81677828 ~ 81678433 (+) True G928913
TU1057591 lncRNA downstream 40833 81679392 ~ 81679639 (+) True G928932
TU1057609 lncRNA downstream 63984 81702543 ~ 81702826 (+) True G928947
TU1057610 lncRNA downstream 88909 81727468 ~ 81727673 (+) True G928948
XM_036934192.1 mRNA upstream 21339 81558744 ~ 81615329 (+) False LOC118936818
XM_036934193.1 mRNA upstream 21339 81558744 ~ 81615329 (+) False LOC118936818
XM_036934189.1 mRNA upstream 101677 81526514 ~ 81534991 (+) False LOC110513527
XM_036934190.1 mRNA upstream 101677 81526514 ~ 81534991 (+) False LOC110513527
XR_005034264.1 mRNA upstream 132104 81503209 ~ 81504564 (+) False LOC118936817
XR_005034268.1 mRNA downstream 43875 81682434 ~ 81685439 (+) False LOC118936820
XR_005034266.1 mRNA downstream 43877 81682436 ~ 81685439 (+) False LOC118936820
XR_005034269.1 mRNA downstream 43877 81682436 ~ 81685439 (+) False LOC118936820
XR_005034274.1 mRNA downstream 43877 81682436 ~ 81685439 (+) False LOC118936820
XR_005034265.1 mRNA downstream 43878 81682437 ~ 81685439 (+) False LOC118936820
TU1057515 other upstream 40916 81595003 ~ 81595752 (+) False LOC118936818
TU1057514 other upstream 40931 81579385 ~ 81595737 (+) False LOC118936818
TU1057517 other upstream 40931 81595003 ~ 81595737 (+) True LOC118936818
TU1057527 other upstream 106786 81526748 ~ 81529882 (+) True LOC110513527
TU1057519 other upstream 130186 81504675 ~ 81506482 (+) True LOC110518956
TU1057587 other downstream 14832 81653391 ~ 81654277 (+) False G928929
TU1057588 other downstream 14832 81653391 ~ 81654391 (+) True G928929
TU1057598 other downstream 82674 81721233 ~ 81722841 (+) False LOC110514629
TU1057735 other downstream 309551 81948110 ~ 81961513 (+) True G929033
TU1057775 other downstream 534906 82173465 ~ 82201005 (+) False LOC118936825

Expression Profile