RNA id: TU1057609


Basic Information

Item Value
RNA id TU1057609
length 245
lncRNA type intronic
GC content 0.38
exon number 2
gene id G928947
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81702543 ~ 81702826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGTATAAacgtgaggtgaggagagggactaAGAGAATATTGAGTTTTGATTGGCTCAAAATAAACTGCTCGAGAATATTGAGTTTTGATTGGCTCAAAATAAACTGCTCGAGATTATTCAGTTTTGATTGGCTCAGAATAAACTGCTCGAGAATATTGAGTTTTGATTGGCTCAAAATAAACTGCTCGAGAATATTGAGTTTTGATTGGCTCAAAATAAACTGCTCGTCACGCAGCTTCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057591 lncRNA upstream 22904 81679392 ~ 81679639 (+) True G928932
TU1057570 lncRNA upstream 24110 81677828 ~ 81678433 (+) True G928913
TU1057572 lncRNA upstream 46035 81655932 ~ 81656508 (+) True LOC118936819
TU1057582 lncRNA upstream 63388 81636942 ~ 81639155 (+) True G928924
TU1057581 lncRNA upstream 63984 81636668 ~ 81638559 (+) True G928923
TU1057610 lncRNA downstream 24642 81727468 ~ 81727673 (+) True G928948
TU1057595 lncRNA downstream 27271 81730097 ~ 81731678 (+) True LOC110514629
TU1057612 lncRNA downstream 31117 81733943 ~ 81734340 (+) True G928950
TU1057616 lncRNA downstream 44213 81747039 ~ 81747672 (+) True G928954
TU1057623 lncRNA downstream 53602 81756428 ~ 81768165 (+) False G928957
XR_005034268.1 mRNA upstream 17104 81682434 ~ 81685439 (+) False LOC118936820
XR_005034266.1 mRNA upstream 17104 81682436 ~ 81685439 (+) False LOC118936820
XR_005034269.1 mRNA upstream 17104 81682436 ~ 81685439 (+) False LOC118936820
XR_005034274.1 mRNA upstream 17104 81682436 ~ 81685439 (+) False LOC118936820
XR_005034265.1 mRNA upstream 17104 81682437 ~ 81685439 (+) False LOC118936820
XM_036934196.1 mRNA downstream 18404 81721230 ~ 81745845 (+) False LOC110514629
XM_036934195.1 mRNA downstream 18431 81721257 ~ 81745845 (+) False LOC110514629
XM_036934197.1 mRNA downstream 18431 81721257 ~ 81745845 (+) False LOC110514629
XM_036934198.1 mRNA downstream 20438 81723264 ~ 81745845 (+) False LOC110514629
XM_036934199.1 mRNA downstream 20555 81723381 ~ 81745845 (+) False LOC110514629
TU1057571 other upstream 46035 81635738 ~ 81656508 (+) False LOC118936819
TU1057588 other upstream 48152 81653391 ~ 81654391 (+) True G928929
TU1057587 other upstream 48266 81653391 ~ 81654277 (+) False G928929
TU1057515 other upstream 106791 81595003 ~ 81595752 (+) False LOC118936818
TU1057514 other upstream 106806 81579385 ~ 81595737 (+) False LOC118936818
TU1057598 other downstream 18407 81721233 ~ 81722841 (+) False LOC110514629
TU1057735 other downstream 245284 81948110 ~ 81961513 (+) True G929033
TU1057775 other downstream 470639 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 470639 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 476960 82179786 ~ 82180426 (+) True G929113

Expression Profile