RNA id: TU1057616


Basic Information

Item Value
RNA id TU1057616
length 262
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G928954
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81747039 ~ 81747672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTACACTAGATAggactcactgtgtagatatatattacactagataggactcactgtgtagatatatattacactagatgggactcactgtgtagatatatattacactagatgggactcactgtgtagatatatattacactagatgggactcactgtttaaaacatattaaactagataggactcactgtgtagatatttattacactagatgggactcactgtgtagatatatattacactagatgggactcactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057612 lncRNA upstream 12699 81733943 ~ 81734340 (+) True G928950
TU1057595 lncRNA upstream 15361 81730097 ~ 81731678 (+) True LOC110514629
TU1057610 lncRNA upstream 19366 81727468 ~ 81727673 (+) True G928948
TU1057609 lncRNA upstream 44213 81702543 ~ 81702826 (+) True G928947
TU1057591 lncRNA upstream 67400 81679392 ~ 81679639 (+) True G928932
TU1057623 lncRNA downstream 8756 81756428 ~ 81768165 (+) False G928957
TU1057624 lncRNA downstream 8756 81756428 ~ 81764254 (+) False G928957
TU1057628 lncRNA downstream 8756 81756428 ~ 81768547 (+) False G928957
TU1057630 lncRNA downstream 8756 81756428 ~ 81759896 (+) False G928957
TU1057631 lncRNA downstream 8756 81756428 ~ 81767170 (+) True G928957
XM_036934196.1 mRNA upstream 1194 81721230 ~ 81745845 (+) False LOC110514629
XM_036934195.1 mRNA upstream 1194 81721257 ~ 81745845 (+) False LOC110514629
XM_036934197.1 mRNA upstream 1194 81721257 ~ 81745845 (+) False LOC110514629
XM_036934198.1 mRNA upstream 1194 81723264 ~ 81745845 (+) False LOC110514629
XM_036934199.1 mRNA upstream 1194 81723381 ~ 81745845 (+) False LOC110514629
XM_036934202.1 mRNA downstream 2550 81750222 ~ 81754997 (+) False LOC110515659
XM_036934201.1 mRNA downstream 2934 81750606 ~ 81754997 (+) True LOC110515659
XR_005034276.1 mRNA downstream 181473 81929145 ~ 81942287 (+) True LOC118936822
XR_005034365.1 mRNA downstream 216412 81964084 ~ 81964825 (+) False LOC118936939
XM_036934203.1 mRNA downstream 233122 81980794 ~ 81986434 (+) True LOC118936823
TU1057598 other upstream 24198 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 90531 81635738 ~ 81656508 (+) False LOC118936819
TU1057588 other upstream 92648 81653391 ~ 81654391 (+) True G928929
TU1057587 other upstream 92762 81653391 ~ 81654277 (+) False G928929
TU1057517 other upstream 151302 81595003 ~ 81595737 (+) True LOC118936818
TU1057735 other downstream 200438 81948110 ~ 81961513 (+) True G929033
TU1057775 other downstream 425793 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 425793 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 432114 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 449034 82196706 ~ 82201005 (+) False LOC118936825

Expression Profile