RNA id: TU1057702


Basic Information

Item Value
RNA id TU1057702
length 231
lncRNA type intronic
GC content 0.54
exon number 1
gene id G929008
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81895458 ~ 81895688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aCCCCCAACGGCATTGCGTGTATCCCTGAGGGTACGCGTTCCCCAGTTTGAGAAAACCTGCTCCttggcaacggtgtctagattgaatttgtatttgtggtcctggcaactggaccttttttggaacaccattatttttgtcttactgagatttactgtcagggcccaggtctgtcagggcccaggtctgtcagggcccaggtctgtcagggcccaggtctgtcagggccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057700 lncRNA upstream 383 81894871 ~ 81895075 (+) True G929006
TU1057699 lncRNA upstream 2176 81893058 ~ 81893282 (+) True G929005
TU1057696 lncRNA upstream 5058 81890079 ~ 81890400 (+) True G929002
TU1057695 lncRNA upstream 6435 81888633 ~ 81889023 (+) True G929001
TU1057694 lncRNA upstream 7734 81887470 ~ 81887724 (+) True G929000
TU1057704 lncRNA downstream 664 81896352 ~ 81896676 (+) True G929010
TU1057715 lncRNA downstream 14938 81910626 ~ 81911366 (+) True G929020
TU1057716 lncRNA downstream 16600 81912288 ~ 81912510 (+) True G929021
TU1057717 lncRNA downstream 17630 81913318 ~ 81914542 (+) True G929022
TU1057718 lncRNA downstream 20489 81916177 ~ 81916466 (+) True G929023
XM_036934202.1 mRNA upstream 140461 81750222 ~ 81754997 (+) False LOC110515659
XM_036934201.1 mRNA upstream 140461 81750606 ~ 81754997 (+) True LOC110515659
XM_036934197.1 mRNA upstream 149613 81721257 ~ 81745845 (+) False LOC110514629
XR_005034276.1 mRNA downstream 33457 81929145 ~ 81942287 (+) True LOC118936822
XR_005034365.1 mRNA downstream 68396 81964084 ~ 81964825 (+) False LOC118936939
XM_036934203.1 mRNA downstream 85106 81980794 ~ 81986434 (+) True LOC118936823
XM_036989408.1 mRNA downstream 101733 81997421 ~ 82120937 (+) False LOC118936694
XM_036934204.1 mRNA downstream 277643 82173331 ~ 82209334 (+) False LOC118936825
TU1057598 other upstream 172617 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 238950 81635738 ~ 81656508 (+) False LOC118936819
TU1057588 other upstream 241067 81653391 ~ 81654391 (+) True G928929
TU1057587 other upstream 241181 81653391 ~ 81654277 (+) False G928929
TU1057517 other upstream 299721 81595003 ~ 81595737 (+) True LOC118936818
TU1057735 other downstream 52422 81948110 ~ 81961513 (+) True G929033
TU1057775 other downstream 277777 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 277777 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 284098 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 301018 82196706 ~ 82201005 (+) False LOC118936825

Expression Profile