RNA id: TU1057728



Basic Information


Item Value
RNA id TU1057728
length 202
lncRNA type read_through
GC content 0.51
exon number 1
gene id G929031
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81933118 ~ 81933319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgtgtgtgtgtgtgtgtgtgcctgtgtgcgtgtggcTTGCAGAGGCCCTTTCTCCACTgttgcgtgcgtttgtgtgtgaaGACAAGACCTTCACCCCACCCAATgagcctctgtcctctcctcgacAGACTGCTGTGATTGATCCTGTATTTTGTACAGTGCATTGACACCATACACGTGGGTAATACtgatataaccccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1057721 lncRNA upstream 6210 81924096 ~ 81926908 (+) False G929026
TU1057722 lncRNA upstream 7786 81924096 ~ 81925332 (+) True G929026
TU1057720 lncRNA upstream 9128 81923616 ~ 81923990 (+) True G929025
TU1057718 lncRNA upstream 16652 81916177 ~ 81916466 (+) True G929023
TU1057717 lncRNA upstream 18576 81913318 ~ 81914542 (+) True G929022
TU1057742 lncRNA downstream 25081 81958400 ~ 81959272 (+) False G929040
TU1057743 lncRNA downstream 25081 81958400 ~ 81959272 (+) True G929040
TU1057745 lncRNA downstream 28411 81961730 ~ 81962893 (+) True G929042
TU1057748 lncRNA downstream 30782 81964101 ~ 81965938 (+) True LOC118936939
TU1057751 lncRNA downstream 35851 81969170 ~ 81969403 (+) True G929046
XM_036934202.1 mRNA upstream 178121 81750222 ~ 81754997 (+) False LOC110515659
XM_036934201.1 mRNA upstream 178121 81750606 ~ 81754997 (+) True LOC110515659
XM_036934197.1 mRNA upstream 187273 81721257 ~ 81745845 (+) False LOC110514629
XR_005034365.1 mRNA downstream 30765 81964084 ~ 81964825 (+) False LOC118936939
XM_036934203.1 mRNA downstream 47475 81980794 ~ 81986434 (+) True LOC118936823
XM_036989408.1 mRNA downstream 64102 81997421 ~ 82120937 (+) False LOC118936694
XM_036934204.1 mRNA downstream 240012 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA downstream 240012 82173331 ~ 82209334 (+) False LOC118936825
TU1057598 other upstream 210277 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 276610 81635738 ~ 81656508 (+) False LOC118936819
TU1057588 other upstream 278727 81653391 ~ 81654391 (+) True G928929
TU1057587 other upstream 278841 81653391 ~ 81654277 (+) False G928929
TU1057517 other upstream 337381 81595003 ~ 81595737 (+) True LOC118936818
TU1057735 other downstream 14791 81948110 ~ 81961513 (+) True G929033
TU1057775 other downstream 240146 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 240146 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 246467 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 263387 82196706 ~ 82201005 (+) False LOC118936825

Expression Profile