RNA id: TU1057761


Basic Information

Item Value
RNA id TU1057761
length 642
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G929053
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81990867 ~ 81991508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCctactcccctagacacctggggagtgttggtcagagaccaggtcatctactcccctagacacctggggagtgttggtcagagaccaggtcatctactcccctagacacatggggagtgttggtcagagaccaggtcatctactcccctagacacctggggagtgttggtcagagaccaggtcatctactcccctagacacctggggagtgttggtcagagaccaggtcatctactcccctagacacctggggagtgttggtcagagaccaggtcatctactcccttagacacctggggagtgttggtcagagaccaggtcatctactcccctagacacctggggagtgttggtcagagaccaggtcatctactcccctagacacctggggagtgttggtcagagaccaggtcatctactcccctagacaatcatctctcattcctctctaaATGTGGGCACTTGTTCACTTCCTTGTCCTCTTTATGGCAGAATGTTAGAATGAGGAGACAACAAGACACGATGacacttttttattttaaatgcaCCGACTTGGTGGAACGCCCCCCCATATAGATGAATATATTATGTCAGAGGACGTGTTGTTTCGGATGAGCCTACGCTACCCTATAACCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057754 lncRNA upstream 20315 81970272 ~ 81970552 (+) True G929049
TU1057751 lncRNA upstream 21464 81969170 ~ 81969403 (+) True G929046
TU1057748 lncRNA upstream 24929 81964101 ~ 81965938 (+) True LOC118936939
TU1057745 lncRNA upstream 27974 81961730 ~ 81962893 (+) True G929042
TU1057742 lncRNA upstream 31595 81958400 ~ 81959272 (+) False G929040
TU1057782 lncRNA downstream 2319 81993827 ~ 81994631 (+) True G929062
TU1057784 lncRNA downstream 5095 81996603 ~ 81996820 (+) True G929063
TU1057785 lncRNA downstream 8866 82000374 ~ 82000623 (+) True G929064
TU1057792 lncRNA downstream 15756 82007264 ~ 82007759 (+) False G929068
TU1057793 lncRNA downstream 15756 82007264 ~ 82007759 (+) True G929068
XM_036934203.1 mRNA upstream 4433 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 26042 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 48580 81929145 ~ 81942287 (+) True LOC118936822
XM_036934202.1 mRNA upstream 235870 81750222 ~ 81754997 (+) False LOC110515659
XM_036934201.1 mRNA upstream 235870 81750606 ~ 81754997 (+) True LOC110515659
XM_036989408.1 mRNA downstream 5913 81997421 ~ 82120937 (+) False LOC118936694
XM_036934204.1 mRNA downstream 181823 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA downstream 181823 82173331 ~ 82209334 (+) False LOC118936825
XR_005034278.1 mRNA downstream 181823 82173331 ~ 82209334 (+) False LOC118936825
XR_005034279.1 mRNA downstream 181823 82173331 ~ 82209334 (+) False LOC118936825
TU1057735 other upstream 29354 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 268026 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 334359 81635738 ~ 81656508 (+) False LOC118936819
TU1057775 other downstream 181957 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 181957 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 188278 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 205198 82196706 ~ 82201005 (+) False LOC118936825
TU1057878 other downstream 222372 82213880 ~ 82215718 (+) True LOC110510824

Expression Profile