RNA id: TU1057784


Basic Information

Item Value
RNA id TU1057784
length 218
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G929063
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81996603 ~ 81996820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCTTCGTTAACTCTGTGTAGTCTTTTTGTTGTCCCAGTCTTCGTTAACTCTGTGTAGTCTTTTTGTTTGTCCCAGTCTTCGTTAACTCTGTGTAGTCTTTTTGTTGTCCCAGTCTTCAGAAACTCTGTGTAATGGTATGGTTGTCCCAGTCTTCGTTAACTCTGTGTAGTCTTTTTGTTGTCCCAGTCTTCATTAACTCTGTGTAGTCTTTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057782 lncRNA upstream 1972 81993827 ~ 81994631 (+) True G929062
TU1057761 lncRNA upstream 5095 81990867 ~ 81991508 (+) True G929053
TU1057754 lncRNA upstream 26051 81970272 ~ 81970552 (+) True G929049
TU1057751 lncRNA upstream 27200 81969170 ~ 81969403 (+) True G929046
TU1057748 lncRNA upstream 30665 81964101 ~ 81965938 (+) True LOC118936939
TU1057785 lncRNA downstream 3554 82000374 ~ 82000623 (+) True G929064
TU1057792 lncRNA downstream 10444 82007264 ~ 82007759 (+) False G929068
TU1057793 lncRNA downstream 10444 82007264 ~ 82007759 (+) True G929068
TU1057797 lncRNA downstream 16263 82013083 ~ 82092932 (+) True G929072
TU1057798 lncRNA downstream 16583 82013403 ~ 82014407 (+) True G929073
XM_036934203.1 mRNA upstream 10169 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 31778 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 54316 81929145 ~ 81942287 (+) True LOC118936822
XM_036934202.1 mRNA upstream 241606 81750222 ~ 81754997 (+) False LOC110515659
XM_036989408.1 mRNA downstream 601 81997421 ~ 82120937 (+) False LOC118936694
XM_036934204.1 mRNA downstream 176511 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA downstream 176511 82173331 ~ 82209334 (+) False LOC118936825
XR_005034278.1 mRNA downstream 176511 82173331 ~ 82209334 (+) False LOC118936825
XR_005034279.1 mRNA downstream 176511 82173331 ~ 82209334 (+) False LOC118936825
TU1057735 other upstream 35090 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 273762 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 340095 81635738 ~ 81656508 (+) False LOC118936819
TU1057775 other downstream 176645 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 176645 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 182966 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 199886 82196706 ~ 82201005 (+) False LOC118936825
TU1057878 other downstream 217060 82213880 ~ 82215718 (+) True LOC110510824

Expression Profile