RNA id: TU1057793


Basic Information

Item Value
RNA id TU1057793
length 462
lncRNA type intronic
GC content 0.34
exon number 2
gene id G929068
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82007264 ~ 82007759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGGATCACCCTACTTAAccagtcagctagttagttatcATTACAGAACTTACATTAGTTGGATCATACACATGAGGTGAATGAGTTACTGGTATCTAACTAactaagataagggagttaaggcttTAAATAGGCTGAATGAGTTACTGGTATCTAACTAACTAAGTAAGATAAGGGAGTTTAGGCTTTAAATAGGCTGAATGAGTTACTGGTATCTAACTAACTTAACAgggtttgtgttgttgttttgcatAAAACTCTAAACATATTGTTGGTATTTTGTTTTGCCAATGTGTTGGTTTAGAGATTCCTCAAACCCCTGGGTCGTGTTTTTACTAGCTAGTTAAACCCGGAAGTTTAGAAAacataatattgttttaactatATTTTCAGAGAAGAATAAAGTAGGAAGTGGTGTCTGTTTTTAAATGTCTTTATAGTAGCAGGGAACACTGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057785 lncRNA upstream 6641 82000374 ~ 82000623 (+) True G929064
TU1057784 lncRNA upstream 10444 81996603 ~ 81996820 (+) True G929063
TU1057782 lncRNA upstream 12633 81993827 ~ 81994631 (+) True G929062
TU1057761 lncRNA upstream 15756 81990867 ~ 81991508 (+) True G929053
TU1057754 lncRNA upstream 36712 81970272 ~ 81970552 (+) True G929049
TU1057797 lncRNA downstream 5324 82013083 ~ 82092932 (+) True G929072
TU1057798 lncRNA downstream 5644 82013403 ~ 82014407 (+) True G929073
TU1057809 lncRNA downstream 32829 82040588 ~ 82041457 (+) True G929084
TU1057814 lncRNA downstream 35911 82043670 ~ 82043946 (+) True G929086
TU1057815 lncRNA downstream 42767 82050526 ~ 82051275 (+) True G929087
XM_036934203.1 mRNA upstream 20830 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 42439 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 64977 81929145 ~ 81942287 (+) True LOC118936822
XM_036934202.1 mRNA upstream 252267 81750222 ~ 81754997 (+) False LOC110515659
XM_036934204.1 mRNA downstream 165572 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA downstream 165572 82173331 ~ 82209334 (+) False LOC118936825
XR_005034278.1 mRNA downstream 165572 82173331 ~ 82209334 (+) False LOC118936825
XR_005034279.1 mRNA downstream 165572 82173331 ~ 82209334 (+) False LOC118936825
XR_005034280.1 mRNA downstream 165572 82173331 ~ 82209334 (+) False LOC118936825
TU1057735 other upstream 45751 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 284423 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 350756 81635738 ~ 81656508 (+) False LOC118936819
TU1057775 other downstream 165706 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 165706 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 172027 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 188947 82196706 ~ 82201005 (+) False LOC118936825
TU1057878 other downstream 206121 82213880 ~ 82215718 (+) True LOC110510824

Expression Profile