RNA id: TU1057809


Basic Information

Item Value
RNA id TU1057809
length 339
lncRNA type intronic
GC content 0.45
exon number 4
gene id G929084
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82040588 ~ 82041457 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaacacagaacacagaacacagagcacagaacacagaacacagaacacagaacacagagcacagaacacagaacacagagcacagaacacagaacacagaacacagagcacagagcacagaacacagaacacagagcacaattcagaacatcaatagacaagaacagctcaaggacagaactatatTCATTATTAAAAAGGCCCATGTAGCCTCCATATCAATGCTTAAacacaaactatctgggtccaatagggggagaggaggtgtggCCGGGAGGTGTGgctttatctgccctcatatcaatacatagacacaaactatctgggtccaataggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057798 lncRNA upstream 26181 82013403 ~ 82014407 (+) True G929073
TU1057792 lncRNA upstream 32829 82007264 ~ 82007759 (+) False G929068
TU1057793 lncRNA upstream 32829 82007264 ~ 82007759 (+) True G929068
TU1057785 lncRNA upstream 39965 82000374 ~ 82000623 (+) True G929064
TU1057784 lncRNA upstream 43768 81996603 ~ 81996820 (+) True G929063
TU1057814 lncRNA downstream 2213 82043670 ~ 82043946 (+) True G929086
TU1057815 lncRNA downstream 9069 82050526 ~ 82051275 (+) True G929087
TU1057769 lncRNA downstream 18154 82059611 ~ 82082138 (+) True LOC118936694
TU1057824 lncRNA downstream 54869 82096326 ~ 82097580 (+) False G929095
TU1057825 lncRNA downstream 54869 82096326 ~ 82097828 (+) False G929095
XM_036934203.1 mRNA upstream 54154 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 75763 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 98301 81929145 ~ 81942287 (+) True LOC118936822
XM_036934202.1 mRNA upstream 285591 81750222 ~ 81754997 (+) False LOC110515659
XM_036934204.1 mRNA downstream 131874 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA downstream 131874 82173331 ~ 82209334 (+) False LOC118936825
XR_005034278.1 mRNA downstream 131874 82173331 ~ 82209334 (+) False LOC118936825
XR_005034279.1 mRNA downstream 131874 82173331 ~ 82209334 (+) False LOC118936825
XR_005034280.1 mRNA downstream 131874 82173331 ~ 82209334 (+) False LOC118936825
TU1057735 other upstream 79075 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 317747 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 384080 81635738 ~ 81656508 (+) False LOC118936819
TU1057775 other downstream 132008 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 132008 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 138329 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 155249 82196706 ~ 82201005 (+) False LOC118936825
TU1057878 other downstream 172423 82213880 ~ 82215718 (+) True LOC110510824

Expression Profile