RNA id: TU1057815


Basic Information

Item Value
RNA id TU1057815
length 218
lncRNA type intronic
GC content 0.49
exon number 2
gene id G929087
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82050526 ~ 82051275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctgtttagggtcagtcacagtggtcaggtattctgccactgtgtactctctgtttagggtcagtcacagtggtcaggtattctgctactgtgtcctctctgtttagggtcagtcacagtggtcaggtattctgccactgtgtactctctgtttagggtcagtcacagtggtcaggtattctgccactgtgtactctctgtttagggtcagtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057814 lncRNA upstream 6580 82043670 ~ 82043946 (+) True G929086
TU1057809 lncRNA upstream 9069 82040588 ~ 82041457 (+) True G929084
TU1057798 lncRNA upstream 36119 82013403 ~ 82014407 (+) True G929073
TU1057792 lncRNA upstream 42767 82007264 ~ 82007759 (+) False G929068
TU1057793 lncRNA upstream 42767 82007264 ~ 82007759 (+) True G929068
TU1057769 lncRNA downstream 8336 82059611 ~ 82082138 (+) True LOC118936694
TU1057824 lncRNA downstream 45051 82096326 ~ 82097580 (+) False G929095
TU1057825 lncRNA downstream 45051 82096326 ~ 82097828 (+) False G929095
TU1057823 lncRNA downstream 45367 82096642 ~ 82098221 (+) False G929095
TU1057826 lncRNA downstream 45367 82096642 ~ 82098832 (+) True G929095
XM_036934203.1 mRNA upstream 64092 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 85701 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 108239 81929145 ~ 81942287 (+) True LOC118936822
XM_036934202.1 mRNA upstream 295529 81750222 ~ 81754997 (+) False LOC110515659
XM_036934204.1 mRNA downstream 122056 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA downstream 122056 82173331 ~ 82209334 (+) False LOC118936825
XR_005034278.1 mRNA downstream 122056 82173331 ~ 82209334 (+) False LOC118936825
XR_005034279.1 mRNA downstream 122056 82173331 ~ 82209334 (+) False LOC118936825
XR_005034280.1 mRNA downstream 122056 82173331 ~ 82209334 (+) False LOC118936825
TU1057735 other upstream 89013 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 327685 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 394018 81635738 ~ 81656508 (+) False LOC118936819
TU1057775 other downstream 122190 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 122190 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 128511 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 145431 82196706 ~ 82201005 (+) False LOC118936825
TU1057878 other downstream 162605 82213880 ~ 82215718 (+) True LOC110510824

Expression Profile