RNA id: TU1057827


Basic Information

Item Value
RNA id TU1057827
length 248
lncRNA type intronic
GC content 0.50
exon number 2
gene id G929096
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82101700 ~ 82103252 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacaccctacaccctacagcacgccatcctcatagacctgggtgagaccctatactatacactatacactacaccctacaccctacacactacacactatacactacaccctacaccctacagcacgccatcctcatagacctgggtgagaccctatactacacactatacactacacactacaccctacacactacaccctacagcacgccatcctcatagacctgggtgagaccctatactatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057826 lncRNA upstream 2868 82096642 ~ 82098832 (+) True G929095
TU1057823 lncRNA upstream 3479 82096642 ~ 82098221 (+) False G929095
TU1057825 lncRNA upstream 3872 82096326 ~ 82097828 (+) False G929095
TU1057824 lncRNA upstream 4120 82096326 ~ 82097580 (+) False G929095
TU1057797 lncRNA upstream 8768 82013083 ~ 82092932 (+) True G929072
TU1057830 lncRNA downstream 14881 82118133 ~ 82118947 (+) True G929099
TU1057772 lncRNA downstream 22841 82126093 ~ 82126901 (+) True G929057
TU1057834 lncRNA downstream 26260 82129512 ~ 82129797 (+) True G929101
TU1057835 lncRNA downstream 27758 82131010 ~ 82131240 (+) True G929102
TU1057836 lncRNA downstream 28069 82131321 ~ 82131658 (+) True G929103
XM_036934203.1 mRNA upstream 115266 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 136875 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 159413 81929145 ~ 81942287 (+) True LOC118936822
XM_036934202.1 mRNA upstream 346703 81750222 ~ 81754997 (+) False LOC110515659
XM_036934204.1 mRNA downstream 70079 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA downstream 70079 82173331 ~ 82209334 (+) False LOC118936825
XR_005034278.1 mRNA downstream 70079 82173331 ~ 82209334 (+) False LOC118936825
XR_005034279.1 mRNA downstream 70079 82173331 ~ 82209334 (+) False LOC118936825
XR_005034280.1 mRNA downstream 70079 82173331 ~ 82209334 (+) False LOC118936825
TU1057735 other upstream 140187 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 378859 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 445192 81635738 ~ 81656508 (+) False LOC118936819
TU1057775 other downstream 70213 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 70213 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 76534 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 93454 82196706 ~ 82201005 (+) False LOC118936825
TU1057878 other downstream 110628 82213880 ~ 82215718 (+) True LOC110510824

Expression Profile