RNA id: TU1057836


Basic Information

Item Value
RNA id TU1057836
length 338
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G929103
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82131321 ~ 82131658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctgtctctgtctatatacagtctgtctctctctctgtctctgtctatatacagtctgtctctctctctctgtctctgtctatatacagtctgtctctctctctgtctctgtctatatacagtctgtctctctctctgtctctgtctatatacagtctctctctctctgtctctgtctatatacagtctgtctctctctctgtctctgtctatatacagtctgtctctctctctctgtctctgtctatatacagtctgtctctctctctctgtcactgtctatatacagtctgtctctctctctgtctctgtctatatacagtctgtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057835 lncRNA upstream 81 82131010 ~ 82131240 (+) True G929102
TU1057834 lncRNA upstream 1524 82129512 ~ 82129797 (+) True G929101
TU1057772 lncRNA upstream 4420 82126093 ~ 82126901 (+) True G929057
TU1057830 lncRNA upstream 12374 82118133 ~ 82118947 (+) True G929099
TU1057827 lncRNA upstream 28069 82101700 ~ 82103252 (+) True G929096
TU1057837 lncRNA downstream 890 82132548 ~ 82132806 (+) True G929104
TU1057841 lncRNA downstream 28239 82159897 ~ 82160748 (+) False G929107
TU1057842 lncRNA downstream 28548 82160206 ~ 82160748 (+) True G929107
TU1057846 lncRNA downstream 37269 82168927 ~ 82185577 (+) True G929110
TU1057773 lncRNA downstream 41807 82173465 ~ 82202588 (+) False LOC118936825
XM_036989408.1 mRNA upstream 10384 81997421 ~ 82120937 (+) False LOC118936694
XM_036934203.1 mRNA upstream 144887 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 166496 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 189034 81929145 ~ 81942287 (+) True LOC118936822
XM_036934201.1 mRNA upstream 376324 81750606 ~ 81754997 (+) True LOC110515659
XM_036934204.1 mRNA downstream 41673 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA downstream 41673 82173331 ~ 82209334 (+) False LOC118936825
XR_005034278.1 mRNA downstream 41673 82173331 ~ 82209334 (+) False LOC118936825
XR_005034279.1 mRNA downstream 41673 82173331 ~ 82209334 (+) False LOC118936825
XR_005034280.1 mRNA downstream 41673 82173331 ~ 82209334 (+) False LOC118936825
TU1057735 other upstream 169808 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 408480 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 474813 81635738 ~ 81656508 (+) False LOC118936819
TU1057775 other downstream 41807 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 41807 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 48128 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 65048 82196706 ~ 82201005 (+) False LOC118936825
TU1057878 other downstream 82222 82213880 ~ 82215718 (+) True LOC110510824

Expression Profile