RNA id: TU1057861


Basic Information

Item Value
RNA id TU1057861
length 456
lncRNA type intronic
GC content 0.44
exon number 2
gene id G929121
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82197092 ~ 82198233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgatggtgtgtgagggtgtgatggtgtgtgtgatggtgtgggggtgtgtgtgagggtttttggctgtgatggtgtgtgtgagggtgtgtgtgtaacggtattcttcgtcctcctctgacgaggagtatgaaatgtgggaccaatgcgcagcgtggtatgtgttcatgatgtttatttTACTGAACACTgagaatacaaaataacaacgtgaaaataaacgaaaaccgaaacagtcctgaaaggtgcagaaaacactagaCAGAAAAaaaatcacccacaacccacaggtgggaaaaggctacctaagtatgattctcaatcagagacaacgaacgacacctgcctctgattgagaaccataccaggccaaacacataaacgcaacatagaaaaaagaacatagactacccaccccaactcacgccctgaccaaactaaaacaaagacataacaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057855 lncRNA upstream 6442 82188025 ~ 82190650 (+) False G929117
TU1057856 lncRNA upstream 6442 82189139 ~ 82190650 (+) True G929117
TU1057846 lncRNA upstream 11515 82168927 ~ 82185577 (+) True G929110
TU1057774 lncRNA upstream 15649 82173465 ~ 82181443 (+) False LOC118936825
TU1057841 lncRNA upstream 36344 82159897 ~ 82160748 (+) False G929107
TU1057885 lncRNA downstream 4694 82202927 ~ 82203688 (+) True G929127
TU1057766 lncRNA downstream 10304 82208537 ~ 82210018 (+) False LOC118936825
TU1057763 lncRNA downstream 11302 82209535 ~ 82211022 (+) False LOC118936825
TU1057765 lncRNA downstream 11302 82209535 ~ 82211022 (+) True LOC118936825
TU1057892 lncRNA downstream 18346 82216579 ~ 82217229 (+) True G929130
XM_036989408.1 mRNA upstream 76155 81997421 ~ 82120937 (+) False LOC118936694
XM_036934203.1 mRNA upstream 210658 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 232267 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 254805 81929145 ~ 81942287 (+) True LOC118936822
XM_036934201.1 mRNA upstream 442095 81750606 ~ 81754997 (+) True LOC110515659
XM_036934209.1 mRNA downstream 14215 82212448 ~ 82232854 (+) False LOC110510824
XM_036934213.1 mRNA downstream 14215 82212448 ~ 82232854 (+) False LOC110510824
XM_036934212.1 mRNA downstream 14215 82212448 ~ 82232974 (+) False LOC110510824
XM_036934211.1 mRNA downstream 14215 82212448 ~ 82232976 (+) False LOC110510824
XM_036934210.1 mRNA downstream 15050 82213283 ~ 82232854 (+) False LOC110510824
TU1057850 other upstream 16666 82179786 ~ 82180426 (+) True G929113
TU1057735 other upstream 235579 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 474251 81721233 ~ 81722841 (+) False LOC110514629
TU1057588 other upstream 542701 81653391 ~ 81654391 (+) True G928929
TU1057587 other upstream 542815 81653391 ~ 81654277 (+) False G928929
TU1057878 other downstream 15647 82213880 ~ 82215718 (+) True LOC110510824
TU1057903 other downstream 93717 82291950 ~ 82304282 (+) False LOC118936827
TU1057946 other downstream 110570 82308803 ~ 82309572 (+) False G929159
TU1057948 other downstream 110570 82308803 ~ 82309572 (+) True G929159
TU1058175 other downstream 543201 82741434 ~ 82742780 (+) False LOC118936830

Expression Profile