RNA id: TU1057885


Basic Information

Item Value
RNA id TU1057885
length 373
lncRNA type intronic
GC content 0.36
exon number 2
gene id G929127
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82202927 ~ 82203688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaacatactgtactgtagaatactgtactgtaggtatgtaacatactgtactgtaggtatgtaacatactgtactgtagaatactgtactgtaggtatgtaacatactgtactgtaggtatgtaacatactgtactgtaggtatgtagcatactgcactgtaggtatgtagaatactgtactgtaggtatgtaaaatactgtactgtagcatactgtactgtaggtatgtagcatactgtactgtaggtaggtagaatactgtactgtaggtatgtagagtactgtactgtaacatactgtactgtaggtatgtagagtactgtactgtaggtatgtaacatactgtactgtaggtatgtagcatactgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057773 lncRNA upstream 339 82173465 ~ 82202588 (+) False LOC118936825
TU1057861 lncRNA upstream 4694 82197092 ~ 82198233 (+) False G929121
TU1057862 lncRNA upstream 4694 82197445 ~ 82198233 (+) True G929121
TU1057855 lncRNA upstream 12277 82188025 ~ 82190650 (+) False G929117
TU1057856 lncRNA upstream 12277 82189139 ~ 82190650 (+) True G929117
TU1057766 lncRNA downstream 4849 82208537 ~ 82210018 (+) False LOC118936825
TU1057763 lncRNA downstream 5847 82209535 ~ 82211022 (+) False LOC118936825
TU1057765 lncRNA downstream 5847 82209535 ~ 82211022 (+) True LOC118936825
TU1057892 lncRNA downstream 12891 82216579 ~ 82217229 (+) True G929130
TU1057893 lncRNA downstream 17365 82221053 ~ 82226653 (+) True G929131
XM_036989408.1 mRNA upstream 81990 81997421 ~ 82120937 (+) False LOC118936694
XM_036934203.1 mRNA upstream 216493 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 238102 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 260640 81929145 ~ 81942287 (+) True LOC118936822
XM_036934201.1 mRNA upstream 447930 81750606 ~ 81754997 (+) True LOC110515659
XM_036934209.1 mRNA downstream 8760 82212448 ~ 82232854 (+) False LOC110510824
XM_036934213.1 mRNA downstream 8760 82212448 ~ 82232854 (+) False LOC110510824
XM_036934212.1 mRNA downstream 8760 82212448 ~ 82232974 (+) False LOC110510824
XM_036934211.1 mRNA downstream 8760 82212448 ~ 82232976 (+) False LOC110510824
XM_036934210.1 mRNA downstream 9595 82213283 ~ 82232854 (+) False LOC110510824
TU1057775 other upstream 1922 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other upstream 1922 82173465 ~ 82201005 (+) False LOC118936825
TU1057777 other upstream 1922 82196706 ~ 82201005 (+) False LOC118936825
TU1057850 other upstream 22501 82179786 ~ 82180426 (+) True G929113
TU1057735 other upstream 241414 81948110 ~ 81961513 (+) True G929033
TU1057878 other downstream 10192 82213880 ~ 82215718 (+) True LOC110510824
TU1057903 other downstream 88262 82291950 ~ 82304282 (+) False LOC118936827
TU1057946 other downstream 105115 82308803 ~ 82309572 (+) False G929159
TU1057948 other downstream 105115 82308803 ~ 82309572 (+) True G929159
TU1058175 other downstream 537746 82741434 ~ 82742780 (+) False LOC118936830

Expression Profile