RNA id: TU1057935


Basic Information

Item Value
RNA id TU1057935
length 409
lncRNA type intronic
GC content 0.51
exon number 3
gene id G929154
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82289164 ~ 82290432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgattgactggctggctgactgattgattgactggctggctgtctgggtgactggctggctgtctgattggctagctgactgactgattgactgacttgattgattgactggctggctgtctgggtgactggctggctggttgactgactagctgactgattgactgagtagttgactggctggctgattgactgactagctcgctgactgattgagtgactggttgactggctggctgactgactgatatgtTGGAACGACGTCAAACACCTGGAAATCATGTGtgtggaaagccttccacagggatgctggtccatgttgactctacaaggtgttgaaagccttccacagggatgctggtccatgttgactctacaaggtgttgaaagcgttccacagggatgctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057926 lncRNA upstream 25133 82262925 ~ 82264031 (+) True G929145
TU1057893 lncRNA upstream 62511 82221053 ~ 82226653 (+) True G929131
TU1057892 lncRNA upstream 71935 82216579 ~ 82217229 (+) True G929130
TU1057763 lncRNA upstream 78142 82209535 ~ 82211022 (+) False LOC118936825
TU1057765 lncRNA upstream 78142 82209535 ~ 82211022 (+) True LOC118936825
TU1057936 lncRNA downstream 2137 82292569 ~ 82292988 (+) True G929155
TU1057900 lncRNA downstream 2673 82293105 ~ 82297328 (+) False LOC118936827
TU1057906 lncRNA downstream 2673 82293105 ~ 82296846 (+) True LOC118936827
TU1057941 lncRNA downstream 15626 82306058 ~ 82306489 (+) False G929158
TU1057942 lncRNA downstream 15626 82306058 ~ 82306489 (+) False G929158
XM_036934211.1 mRNA upstream 56188 82212448 ~ 82232976 (+) False LOC110510824
XM_036934212.1 mRNA upstream 56190 82212448 ~ 82232974 (+) False LOC110510824
XM_036934209.1 mRNA upstream 56310 82212448 ~ 82232854 (+) False LOC110510824
XM_036934213.1 mRNA upstream 56310 82212448 ~ 82232854 (+) False LOC110510824
XM_036934210.1 mRNA upstream 56310 82213283 ~ 82232854 (+) False LOC110510824
XM_036934223.1 mRNA downstream 26289 82316721 ~ 82392281 (+) False LOC118936828
XM_036934225.1 mRNA downstream 26289 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA downstream 26289 82316721 ~ 82401240 (+) True LOC118936828
XM_036934228.1 mRNA downstream 436983 82727415 ~ 82738670 (+) True LOC110512972
XR_005034283.1 mRNA downstream 450706 82741138 ~ 82742592 (+) False LOC118936830
TU1057878 other upstream 73446 82213880 ~ 82215718 (+) True LOC110510824
TU1057775 other upstream 88159 82173465 ~ 82201005 (+) False LOC118936825
TU1057903 other downstream 1518 82291950 ~ 82304282 (+) False LOC118936827
TU1057946 other downstream 18371 82308803 ~ 82309572 (+) False G929159
TU1057948 other downstream 18371 82308803 ~ 82309572 (+) True G929159
TU1058175 other downstream 451002 82741434 ~ 82742780 (+) False LOC118936830
TU1058178 other downstream 451002 82741434 ~ 82742780 (+) True LOC118936830

Expression Profile