RNA id: TU1057936


Basic Information

Item Value
RNA id TU1057936
length 330
lncRNA type intronic
GC content 0.49
exon number 2
gene id G929155
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82292569 ~ 82292988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAGGTTAGCCTCTGATGTTCACTGTAATGGGTATGGACGCTACCAAAGGTTAGCCTCTGATGTTCACTGTAATGGGTATGGACGCTACCAAAGGTTAGCCTCTGATGTTCGCTGTTGGGGGTACGGACGCTACCAAAGGTTAGCCTCTGATGTTCACTGTAATGGGTATGGACGCTACCAAGGGTTAGCCTCTGATGTTCACTGTAATGGGTACGGACGCTACCAAAGGTTAGCCTCTGATGTTCACTGTAATGGGTACGGACGCTACCAAAGGTTAGCCTCTGATGTTCACTGTAATGGGTATGGACGCTACCAAAGGTTAGCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057935 lncRNA upstream 2137 82289164 ~ 82290432 (+) True G929154
TU1057926 lncRNA upstream 28538 82262925 ~ 82264031 (+) True G929145
TU1057893 lncRNA upstream 65916 82221053 ~ 82226653 (+) True G929131
TU1057892 lncRNA upstream 75340 82216579 ~ 82217229 (+) True G929130
TU1057763 lncRNA upstream 81547 82209535 ~ 82211022 (+) False LOC118936825
TU1057900 lncRNA downstream 117 82293105 ~ 82297328 (+) False LOC118936827
TU1057906 lncRNA downstream 117 82293105 ~ 82296846 (+) True LOC118936827
TU1057941 lncRNA downstream 13070 82306058 ~ 82306489 (+) False G929158
TU1057942 lncRNA downstream 13070 82306058 ~ 82306489 (+) False G929158
TU1057943 lncRNA downstream 13070 82306058 ~ 82306489 (+) False G929158
XM_036934211.1 mRNA upstream 59593 82212448 ~ 82232976 (+) False LOC110510824
XM_036934212.1 mRNA upstream 59595 82212448 ~ 82232974 (+) False LOC110510824
XM_036934209.1 mRNA upstream 59715 82212448 ~ 82232854 (+) False LOC110510824
XM_036934213.1 mRNA upstream 59715 82212448 ~ 82232854 (+) False LOC110510824
XM_036934210.1 mRNA upstream 59715 82213283 ~ 82232854 (+) False LOC110510824
XM_036934223.1 mRNA downstream 23733 82316721 ~ 82392281 (+) False LOC118936828
XM_036934225.1 mRNA downstream 23733 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA downstream 23733 82316721 ~ 82401240 (+) True LOC118936828
XM_036934228.1 mRNA downstream 434427 82727415 ~ 82738670 (+) True LOC110512972
XR_005034283.1 mRNA downstream 448150 82741138 ~ 82742592 (+) False LOC118936830
TU1057878 other upstream 76851 82213880 ~ 82215718 (+) True LOC110510824
TU1057775 other upstream 91564 82173465 ~ 82201005 (+) False LOC118936825
TU1057946 other downstream 15815 82308803 ~ 82309572 (+) False G929159
TU1057948 other downstream 15815 82308803 ~ 82309572 (+) True G929159
TU1058175 other downstream 448446 82741434 ~ 82742780 (+) False LOC118936830
TU1058178 other downstream 448446 82741434 ~ 82742780 (+) True LOC118936830
TU1058185 other downstream 468617 82761605 ~ 82762488 (+) True G929305

Expression Profile