RNA id: TU1057973


Basic Information

Item Value
RNA id TU1057973
length 328
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G929182
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82412005 ~ 82412680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCATATTTTCTCATCTGAGAGGTCTACAGGTCCTAGCTGACACAACGTCTCTGATATTCTCAGGTAGGAAGCAGCTTCGGTGAATTTGATTGTCATGATTGCTTGTTCAAATTGTACATACAGTTTTCTTCCTATTTCAAGACATTAGTCGTCTTAGACCTACCTATGCAACTGAAAGCTCCATCTGTTATTAACGGGATGCTATAGGTGTAAACCCATAGATGTAGGTTAACTGTTGAAATCTGTTATTAACGGGATGCTATAGGTGTAAACCCATAGATGTAGGCTAACTGTTGAAATCTGTTATTAACGGGATGCTATAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057962 lncRNA upstream 25879 82385568 ~ 82386126 (+) True G929172
TU1057961 lncRNA upstream 33539 82378171 ~ 82378466 (+) True G929171
TU1057919 lncRNA upstream 42354 82369278 ~ 82369651 (+) True G929139
TU1057954 lncRNA upstream 93304 82318078 ~ 82318701 (+) True G929164
TU1057952 lncRNA upstream 95712 82314940 ~ 82316293 (+) True G929162
TU1057977 lncRNA downstream 2550 82415230 ~ 82418023 (+) False G929184
TU1057982 lncRNA downstream 3679 82416359 ~ 82419615 (+) True G929184
TU1057984 lncRNA downstream 4530 82417210 ~ 82419498 (+) True G929186
TU1057997 lncRNA downstream 32514 82445194 ~ 82445612 (+) True G929195
TU1058002 lncRNA downstream 46248 82458928 ~ 82562957 (+) True G929200
XM_036934225.1 mRNA upstream 10765 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA upstream 10765 82316721 ~ 82401240 (+) True LOC118936828
XM_036934223.1 mRNA upstream 19724 82316721 ~ 82392281 (+) False LOC118936828
XM_036934222.1 mRNA upstream 105280 82261288 ~ 82306725 (+) False LOC118936827
XM_036934220.1 mRNA upstream 105305 82274227 ~ 82306700 (+) False LOC118936827
XM_036934228.1 mRNA downstream 314735 82727415 ~ 82738670 (+) True LOC110512972
XR_005034283.1 mRNA downstream 328458 82741138 ~ 82742592 (+) False LOC118936830
XM_036934238.1 mRNA downstream 380973 82793653 ~ 82811450 (+) False LOC118936832
XM_036934240.1 mRNA downstream 380973 82793653 ~ 82811450 (+) False LOC118936832
XM_036934241.1 mRNA downstream 380973 82793653 ~ 82811450 (+) False LOC118936832
TU1057946 other upstream 102433 82308803 ~ 82309572 (+) False G929159
TU1057948 other upstream 102433 82308803 ~ 82309572 (+) True G929159
TU1057903 other upstream 107723 82291950 ~ 82304282 (+) False LOC118936827
TU1057878 other upstream 196287 82213880 ~ 82215718 (+) True LOC110510824
TU1057777 other upstream 211000 82196706 ~ 82201005 (+) False LOC118936825
TU1058175 other downstream 328754 82741434 ~ 82742780 (+) False LOC118936830
TU1058178 other downstream 328754 82741434 ~ 82742780 (+) True LOC118936830
TU1058185 other downstream 348925 82761605 ~ 82762488 (+) True G929305
TU1058109 other downstream 380829 82793509 ~ 82798322 (+) True LOC118936832
TU1058236 other downstream 503116 82915796 ~ 82919230 (+) False LOC110512617

Expression Profile