RNA id: TU1057984


Basic Information

Item Value
RNA id TU1057984
length 241
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G929186
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82417210 ~ 82419498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgtatatagtggatctaggtgttgtataaggggtgatagatactgtatatagtggatctaggtgttgtacagtgtataaggggtgatagatactgtatatagtggatctaggtgttgtataatgggtgatagatactgtatatagtggatctaggtgttgtacatggtataaggggtgatagatactgtatatagtggatctaggtgttgtataaggggtgatagatactatATATAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057973 lncRNA upstream 4530 82412005 ~ 82412680 (+) True G929182
TU1057962 lncRNA upstream 31084 82385568 ~ 82386126 (+) True G929172
TU1057961 lncRNA upstream 38744 82378171 ~ 82378466 (+) True G929171
TU1057919 lncRNA upstream 47559 82369278 ~ 82369651 (+) True G929139
TU1057954 lncRNA upstream 98509 82318078 ~ 82318701 (+) True G929164
TU1057997 lncRNA downstream 25696 82445194 ~ 82445612 (+) True G929195
TU1058002 lncRNA downstream 39430 82458928 ~ 82562957 (+) True G929200
TU1058011 lncRNA downstream 52722 82472220 ~ 82477848 (+) True G929208
TU1058012 lncRNA downstream 54129 82473627 ~ 82478103 (+) True G929209
TU1058013 lncRNA downstream 54594 82474092 ~ 82475661 (+) True G929210
XM_036934225.1 mRNA upstream 15970 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA upstream 15970 82316721 ~ 82401240 (+) True LOC118936828
XM_036934223.1 mRNA upstream 24929 82316721 ~ 82392281 (+) False LOC118936828
XM_036934221.1 mRNA upstream 110510 82274227 ~ 82306700 (+) False LOC118936827
XM_036934228.1 mRNA downstream 307917 82727415 ~ 82738670 (+) True LOC110512972
XR_005034283.1 mRNA downstream 321640 82741138 ~ 82742592 (+) False LOC118936830
XM_036934238.1 mRNA downstream 374155 82793653 ~ 82811450 (+) False LOC118936832
XM_036934240.1 mRNA downstream 374155 82793653 ~ 82811450 (+) False LOC118936832
XM_036934241.1 mRNA downstream 374155 82793653 ~ 82811450 (+) False LOC118936832
TU1057946 other upstream 107638 82308803 ~ 82309572 (+) False G929159
TU1057948 other upstream 107638 82308803 ~ 82309572 (+) True G929159
TU1057903 other upstream 112928 82291950 ~ 82304282 (+) False LOC118936827
TU1057878 other upstream 201492 82213880 ~ 82215718 (+) True LOC110510824
TU1057777 other upstream 216205 82196706 ~ 82201005 (+) False LOC118936825
TU1058175 other downstream 321936 82741434 ~ 82742780 (+) False LOC118936830
TU1058178 other downstream 321936 82741434 ~ 82742780 (+) True LOC118936830
TU1058185 other downstream 342107 82761605 ~ 82762488 (+) True G929305
TU1058109 other downstream 374011 82793509 ~ 82798322 (+) True LOC118936832
TU1058236 other downstream 496298 82915796 ~ 82919230 (+) False LOC110512617

Expression Profile