RNA id: TU1057997


Basic Information

Item Value
RNA id TU1057997
length 353
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G929195
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82445194 ~ 82445612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctagtgtagtctaggggtgagtctcaatagtctctaatgtagtctaggggtgagtctcaatagtctctagtgtagCCTTAGGGGTGAGTTtcaatagtctctagtgtagtctaggggtgagtctcaatagtctctagtgtagCCTTAGGGGTGAGTTtcaatagtctctagtgtagtctaggggtgagtctcaatagtctctagtgtagtctaggggtgagtctcaatagtctctagtgtagtctagaggtgagtctcaatagtctctagtgtagtctTGAGGTGAGTCTCAATATtctctagtgtagtctagagGTGAGTCTcagtatatagactctcttttttctactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057982 lncRNA upstream 25579 82416359 ~ 82419615 (+) True G929184
TU1057984 lncRNA upstream 25696 82417210 ~ 82419498 (+) True G929186
TU1057977 lncRNA upstream 27171 82415230 ~ 82418023 (+) False G929184
TU1057973 lncRNA upstream 32514 82412005 ~ 82412680 (+) True G929182
TU1057962 lncRNA upstream 59068 82385568 ~ 82386126 (+) True G929172
TU1058002 lncRNA downstream 13316 82458928 ~ 82562957 (+) True G929200
TU1058011 lncRNA downstream 26608 82472220 ~ 82477848 (+) True G929208
TU1058012 lncRNA downstream 28015 82473627 ~ 82478103 (+) True G929209
TU1058013 lncRNA downstream 28480 82474092 ~ 82475661 (+) True G929210
TU1058014 lncRNA downstream 28677 82474289 ~ 82477186 (+) False G929211
XM_036934225.1 mRNA upstream 43954 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA upstream 43954 82316721 ~ 82401240 (+) True LOC118936828
XM_036934223.1 mRNA upstream 52913 82316721 ~ 82392281 (+) False LOC118936828
XM_036934221.1 mRNA upstream 138494 82274227 ~ 82306700 (+) False LOC118936827
XM_036934228.1 mRNA downstream 281803 82727415 ~ 82738670 (+) True LOC110512972
XR_005034283.1 mRNA downstream 295526 82741138 ~ 82742592 (+) False LOC118936830
XM_036934238.1 mRNA downstream 348041 82793653 ~ 82811450 (+) False LOC118936832
XM_036934240.1 mRNA downstream 348041 82793653 ~ 82811450 (+) False LOC118936832
XM_036934241.1 mRNA downstream 348041 82793653 ~ 82811450 (+) False LOC118936832
TU1057946 other upstream 135622 82308803 ~ 82309572 (+) False G929159
TU1057948 other upstream 135622 82308803 ~ 82309572 (+) True G929159
TU1057903 other upstream 140912 82291950 ~ 82304282 (+) False LOC118936827
TU1057878 other upstream 229476 82213880 ~ 82215718 (+) True LOC110510824
TU1057777 other upstream 244189 82196706 ~ 82201005 (+) False LOC118936825
TU1058175 other downstream 295822 82741434 ~ 82742780 (+) False LOC118936830
TU1058178 other downstream 295822 82741434 ~ 82742780 (+) True LOC118936830
TU1058185 other downstream 315993 82761605 ~ 82762488 (+) True G929305
TU1058109 other downstream 347897 82793509 ~ 82798322 (+) True LOC118936832
TU1058236 other downstream 470184 82915796 ~ 82919230 (+) False LOC110512617

Expression Profile