RNA id: TU1058131


Basic Information

Item Value
RNA id TU1058131
length 237
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G929278
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82689742 ~ 82689978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTAGTTCAGGAGACAAACAGAAAGTGAGATTTGAACCGGAGAAGACGAGGACAGACAGTAGTTCAGACTGACCTCACAGACCAAGGCAGCTGTGGTGGTCTTGCCCACGCCAGGAGGTCCAGATAACAGGGCTGCCTTGAAGCTCGAACCATTATCCTTAGTACTGGTGAACTTACCAAACCCTCtccctgggagagagggagaacacatCCATTATTTATCTACTACTAAGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1058130 lncRNA upstream 55 82689474 ~ 82689687 (+) True G929277
TU1058129 lncRNA upstream 5378 82684141 ~ 82684364 (+) True G929276
TU1058127 lncRNA upstream 6741 82681707 ~ 82683001 (+) True G929274
TU1058125 lncRNA upstream 53690 82634709 ~ 82636052 (+) True G929273
TU1058079 lncRNA upstream 71066 82614953 ~ 82618676 (+) True G929247
TU1058136 lncRNA downstream 7655 82697633 ~ 82698012 (+) True G929282
TU1058138 lncRNA downstream 8533 82698511 ~ 82715829 (+) True G929284
TU1058141 lncRNA downstream 14970 82704948 ~ 82707391 (+) True G929287
TU1058148 lncRNA downstream 27830 82717808 ~ 82718212 (+) False G929294
TU1058150 lncRNA downstream 27830 82717808 ~ 82718305 (+) True G929294
XM_036934225.1 mRNA upstream 288502 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA upstream 288502 82316721 ~ 82401240 (+) True LOC118936828
XM_036934223.1 mRNA upstream 297461 82316721 ~ 82392281 (+) False LOC118936828
XM_036934221.1 mRNA upstream 383042 82274227 ~ 82306700 (+) False LOC118936827
XM_036934228.1 mRNA downstream 37437 82727415 ~ 82738670 (+) True LOC110512972
XR_005034283.1 mRNA downstream 51160 82741138 ~ 82742592 (+) False LOC118936830
XM_036934238.1 mRNA downstream 103675 82793653 ~ 82811450 (+) False LOC118936832
XM_036934240.1 mRNA downstream 103675 82793653 ~ 82811450 (+) False LOC118936832
XM_036934241.1 mRNA downstream 103675 82793653 ~ 82811450 (+) False LOC118936832
TU1057946 other upstream 380170 82308803 ~ 82309572 (+) False G929159
TU1057948 other upstream 380170 82308803 ~ 82309572 (+) True G929159
TU1057903 other upstream 385460 82291950 ~ 82304282 (+) False LOC118936827
TU1057878 other upstream 474024 82213880 ~ 82215718 (+) True LOC110510824
TU1057777 other upstream 488737 82196706 ~ 82201005 (+) False LOC118936825
TU1058175 other downstream 51456 82741434 ~ 82742780 (+) False LOC118936830
TU1058178 other downstream 51456 82741434 ~ 82742780 (+) True LOC118936830
TU1058185 other downstream 71627 82761605 ~ 82762488 (+) True G929305
TU1058109 other downstream 103531 82793509 ~ 82798322 (+) True LOC118936832
TU1058236 other downstream 225818 82915796 ~ 82919230 (+) False LOC110512617

Expression Profile