RNA id: TU1058106


Basic Information

Item Value
RNA id TU1058106
length 430
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G929258
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82738738 ~ 82739793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAAGATAAAGGGGGGTAAATATCTGGGAATATAAAGGGGGGTAAATACCTGGGAAGATAAAGGGGGGCAGTAATTGCCTGGGAAGATAAAGGGGGGCAGTAATTGCCTGGGAAGATAAAGGGGGGGGAGTAATTGCCTGGGAAGATAAAGGGGGGGTCGACCTCCACTCCACCACTGGCTATAGATGTATGATTCATATCAGTCagcaacacacacattcacacagtcaACCTGAGTCGACCAACGCATCAGGAGGGCAGAGggggacaacacaacacaataattTGATTATTGACATGATACTCGGATGAGAGAGAATGACTTGAGGGGTTTGAAATGTGTTGCTATGTGATCAGTGTGTTGCTATGTGACTTGGAGTGTTGTTTTATAATGACTCACGGCTGTACATTAAAAGTATTAAATCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1058096 lncRNA upstream 12672 82719519 ~ 82726066 (+) True G929257
TU1058090 lncRNA upstream 17797 82719519 ~ 82720941 (+) False G929257
TU1058150 lncRNA upstream 20433 82717808 ~ 82718305 (+) True G929294
TU1058148 lncRNA upstream 20526 82717808 ~ 82718212 (+) False G929294
TU1058141 lncRNA upstream 31347 82704948 ~ 82707391 (+) True G929287
TU1058174 lncRNA downstream 1177 82740970 ~ 82780517 (+) False LOC118936830
TU1058173 lncRNA downstream 1364 82741157 ~ 82742780 (+) False LOC118936830
TU1058176 lncRNA downstream 1364 82741157 ~ 82746225 (+) False LOC118936830
TU1058160 lncRNA downstream 1641 82741434 ~ 82742780 (+) False LOC118936830
TU1058161 lncRNA downstream 1641 82741434 ~ 82742780 (+) False LOC118936830
XM_036934228.1 mRNA upstream 68 82727415 ~ 82738670 (+) True LOC110512972
XM_036934225.1 mRNA upstream 337498 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA upstream 337498 82316721 ~ 82401240 (+) True LOC118936828
XM_036934223.1 mRNA upstream 346457 82316721 ~ 82392281 (+) False LOC118936828
XM_036934219.1 mRNA upstream 432038 82274230 ~ 82306700 (+) False LOC118936827
XR_005034283.1 mRNA downstream 1345 82741138 ~ 82742592 (+) False LOC118936830
XM_036934238.1 mRNA downstream 53860 82793653 ~ 82811450 (+) False LOC118936832
XM_036934240.1 mRNA downstream 53860 82793653 ~ 82811450 (+) False LOC118936832
XM_036934241.1 mRNA downstream 53860 82793653 ~ 82811450 (+) False LOC118936832
XM_036934237.1 mRNA downstream 53861 82793654 ~ 82811450 (+) False LOC118936832
TU1057946 other upstream 429166 82308803 ~ 82309572 (+) False G929159
TU1057948 other upstream 429166 82308803 ~ 82309572 (+) True G929159
TU1057903 other upstream 434456 82291950 ~ 82304282 (+) False LOC118936827
TU1057878 other upstream 523020 82213880 ~ 82215718 (+) True LOC110510824
TU1057777 other upstream 537733 82196706 ~ 82201005 (+) False LOC118936825
TU1058175 other downstream 1641 82741434 ~ 82742780 (+) False LOC118936830
TU1058178 other downstream 1641 82741434 ~ 82742780 (+) True LOC118936830
TU1058185 other downstream 21812 82761605 ~ 82762488 (+) True G929305
TU1058109 other downstream 53716 82793509 ~ 82798322 (+) True LOC118936832
TU1058236 other downstream 176003 82915796 ~ 82919230 (+) False LOC110512617

Expression Profile