RNA id: TU1058273


Basic Information

Item Value
RNA id TU1058273
length 882
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G929353
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82979572 ~ 82980453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctggagctcattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaactctgacagtaacagtctctgttacattaaccctgacagtaacagtctggagctcattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctggagctcattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgtaacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgtaacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctggagctcattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtctctgttacattaaccctgacagtaacagtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1058252 lncRNA upstream 26862 82952090 ~ 82952710 (+) True G929346
TU1058244 lncRNA upstream 91856 82884740 ~ 82887716 (+) False G929341
TU1058245 lncRNA upstream 92152 82884740 ~ 82887420 (+) True G929341
TU1058220 lncRNA upstream 122347 82856207 ~ 82857225 (+) False G929328
TU1058221 lncRNA upstream 122347 82856207 ~ 82857225 (+) True G929328
TU1058277 lncRNA downstream 4358 82984811 ~ 82985911 (+) True G929355
TU1058285 lncRNA downstream 23545 83003998 ~ 83004589 (+) True G929360
TU1058289 lncRNA downstream 31358 83011811 ~ 83012084 (+) True G929364
TU1058293 lncRNA downstream 51089 83031542 ~ 83031777 (+) True G929368
TU1058296 lncRNA downstream 57205 83037658 ~ 83037904 (+) True G929371
XM_036934270.1 mRNA upstream 3242 82961071 ~ 82976330 (+) False LOC110515053
XR_005034285.1 mRNA upstream 3242 82961073 ~ 82976330 (+) False LOC110515053
XR_005034286.1 mRNA upstream 3242 82961073 ~ 82976330 (+) False LOC110515053
XM_036934267.1 mRNA upstream 3243 82961073 ~ 82976329 (+) False LOC110515053
XM_036934268.1 mRNA upstream 3243 82961073 ~ 82976329 (+) False LOC110515053
XM_036934592.1 mRNA downstream 10395 82990848 ~ 83014394 (+) True LOC118936273
XM_036989410.1 mRNA downstream 41723 83022176 ~ 83102695 (+) True LOC118966663
XM_036934271.1 mRNA downstream 135003 83115456 ~ 83131029 (+) False LOC110515357
XM_036934272.1 mRNA downstream 135048 83115501 ~ 83131029 (+) False LOC110515357
XR_005034287.1 mRNA downstream 161044 83141497 ~ 83143528 (+) False LOC118936836
TU1058228 other upstream 23241 82953145 ~ 82956331 (+) True LOC110512617
TU1058227 other upstream 30404 82941794 ~ 82949168 (+) False LOC110512617
TU1058230 other upstream 30404 82941814 ~ 82949168 (+) False LOC110512617
TU1058232 other upstream 46405 82927725 ~ 82933167 (+) False LOC110512617
TU1058233 other upstream 47711 82927725 ~ 82931861 (+) False LOC110512617
TU1058295 other downstream 54659 83035112 ~ 83035491 (+) True G929370
TU1059640 other downstream 606135 83586588 ~ 83639961 (+) False LOC110512947
TU1059643 other downstream 606135 83586588 ~ 83598616 (+) False LOC110512947
TU1059635 other downstream 609055 83589508 ~ 83639961 (+) False LOC110512947
TU1059638 other downstream 609055 83589508 ~ 83639961 (+) False LOC110512947

Expression Profile