RNA id: TU1058285


Basic Information

Item Value
RNA id TU1058285
length 240
lncRNA type intronic
GC content 0.40
exon number 2
gene id G929360
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83003998 ~ 83004589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacccctctatccatctctatggtacATTCATGTTGCTACAGCAGGCTTTGGGACTATTAgacccctctatccatctctatagTTCATGTTGCCGTTGAGAGGAGATGCAGGATTCTGTGGTGACTGTTGTTTGTTCTGTTCTAGCTCATCTGGGtttgtggttgtattgtattgtttattgttgttgtttacattgtACCGTTGGTCATATTATTTAATgctgttgtttgtttgtgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1058277 lncRNA upstream 18087 82984811 ~ 82985911 (+) True G929355
TU1058273 lncRNA upstream 23545 82979572 ~ 82980453 (+) True G929353
TU1058252 lncRNA upstream 51288 82952090 ~ 82952710 (+) True G929346
TU1058244 lncRNA upstream 116282 82884740 ~ 82887716 (+) False G929341
TU1058245 lncRNA upstream 116578 82884740 ~ 82887420 (+) True G929341
TU1058289 lncRNA downstream 7222 83011811 ~ 83012084 (+) True G929364
TU1058293 lncRNA downstream 26953 83031542 ~ 83031777 (+) True G929368
TU1058296 lncRNA downstream 33069 83037658 ~ 83037904 (+) True G929371
TU1058306 lncRNA downstream 52935 83057524 ~ 83077219 (+) False G929378
TU1058304 lncRNA downstream 54779 83059368 ~ 83077219 (+) True G929378
XM_036934270.1 mRNA upstream 27668 82961071 ~ 82976330 (+) False LOC110515053
XM_036989410.1 mRNA downstream 17587 83022176 ~ 83102695 (+) True LOC118966663
XM_036934271.1 mRNA downstream 110867 83115456 ~ 83131029 (+) False LOC110515357
XM_036934272.1 mRNA downstream 110912 83115501 ~ 83131029 (+) False LOC110515357
XR_005034287.1 mRNA downstream 136908 83141497 ~ 83143528 (+) False LOC118936836
XM_036934275.1 mRNA downstream 544699 83549288 ~ 83557399 (+) False LOC118936837
TU1058228 other upstream 47667 82953145 ~ 82956331 (+) True LOC110512617
TU1058227 other upstream 54830 82941794 ~ 82949168 (+) False LOC110512617
TU1058230 other upstream 54830 82941814 ~ 82949168 (+) False LOC110512617
TU1058232 other upstream 70831 82927725 ~ 82933167 (+) False LOC110512617
TU1058295 other downstream 30523 83035112 ~ 83035491 (+) True G929370
TU1059640 other downstream 581999 83586588 ~ 83639961 (+) False LOC110512947
TU1059643 other downstream 581999 83586588 ~ 83598616 (+) False LOC110512947
TU1059635 other downstream 584919 83589508 ~ 83639961 (+) False LOC110512947
TU1059638 other downstream 584919 83589508 ~ 83639961 (+) False LOC110512947

Expression Profile