RNA id: TU1058289


Basic Information

Item Value
RNA id TU1058289
length 274
lncRNA type intronic
GC content 0.31
exon number 1
gene id G929364
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83011811 ~ 83012084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacacacacacacacatacatatatgtatatatacatacacatacacatatacatatatatacatatatatacacacatacatgcacatacacacatacatacatacatacacacacacacgcacacacacacacacacacacaccattacatataataattattataataccggtgtcaatacatttaggaatatttgtaaacaaattaataagaatggaataagattgcactgtacttattttatgtgcaatctgcaaccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1058285 lncRNA upstream 7222 83003998 ~ 83004589 (+) True G929360
TU1058277 lncRNA upstream 25900 82984811 ~ 82985911 (+) True G929355
TU1058273 lncRNA upstream 31358 82979572 ~ 82980453 (+) True G929353
TU1058252 lncRNA upstream 59101 82952090 ~ 82952710 (+) True G929346
TU1058244 lncRNA upstream 124095 82884740 ~ 82887716 (+) False G929341
TU1058293 lncRNA downstream 19458 83031542 ~ 83031777 (+) True G929368
TU1058296 lncRNA downstream 25574 83037658 ~ 83037904 (+) True G929371
TU1058306 lncRNA downstream 45440 83057524 ~ 83077219 (+) False G929378
TU1058304 lncRNA downstream 47284 83059368 ~ 83077219 (+) True G929378
TU1058315 lncRNA downstream 82335 83094419 ~ 83183076 (+) True G929387
XM_036934270.1 mRNA upstream 35481 82961071 ~ 82976330 (+) False LOC110515053
XM_036989410.1 mRNA downstream 10092 83022176 ~ 83102695 (+) True LOC118966663
XM_036934271.1 mRNA downstream 103372 83115456 ~ 83131029 (+) False LOC110515357
XM_036934272.1 mRNA downstream 103417 83115501 ~ 83131029 (+) False LOC110515357
XR_005034287.1 mRNA downstream 129413 83141497 ~ 83143528 (+) False LOC118936836
XM_036934275.1 mRNA downstream 537204 83549288 ~ 83557399 (+) False LOC118936837
TU1058228 other upstream 55480 82953145 ~ 82956331 (+) True LOC110512617
TU1058227 other upstream 62643 82941794 ~ 82949168 (+) False LOC110512617
TU1058230 other upstream 62643 82941814 ~ 82949168 (+) False LOC110512617
TU1058232 other upstream 78644 82927725 ~ 82933167 (+) False LOC110512617
TU1058295 other downstream 23028 83035112 ~ 83035491 (+) True G929370
TU1059640 other downstream 574504 83586588 ~ 83639961 (+) False LOC110512947
TU1059643 other downstream 574504 83586588 ~ 83598616 (+) False LOC110512947
TU1059635 other downstream 577424 83589508 ~ 83639961 (+) False LOC110512947
TU1059638 other downstream 577424 83589508 ~ 83639961 (+) False LOC110512947

Expression Profile