RNA id: TU1059621


Basic Information

Item Value
RNA id TU1059621
length 515
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G930333
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83573263 ~ 83573958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTAGTTAAGGTCATCTCTATAATAATGGTCCCTCACCTGTATTTGGCCGGGGTTCCAGGGGAACAGGTACAGGCGAGAAATTAATGTTTCCCCTTTCACTGTCAGATAGAGAATCAGCTCACAGTGGACATCTACGTTCCAAGACAGTAATCTCAGTATCAGAGCGATAGGTGAGAACTTGGGATGGAGAATCTTAACATGGAATCTGGTGACCTCATGCACTTCCTCTAAAGACACTCCATGTTCCTCTGCATGAAGAATCTTCATCTCATTCCTCAGGGAAGGGTTGGTCCctgaaCTAAACAGACAAAGTGTGGCAGATGAACTTCCTCCAGTTCACCTAACTCCATAGTGATGTCCAGCAATGGACCACCTTGTGCGTACTGCATGTCTTTCAGAAGTTGACTGTAGGGTTCCCAGTTCCTGAAGTGATACTTCAGAAtgacatctctctcacacagccaGCGGAGCCCAGACACTGTGCACTCATAACTCCCTCTGGGTGTCCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1059620 lncRNA upstream 1824 83570686 ~ 83571439 (+) True G930332
TU1059605 lncRNA upstream 23836 83540003 ~ 83549427 (+) True LOC118936837
TU1059606 lncRNA upstream 26638 83542199 ~ 83546625 (+) True G930321
TU1059610 lncRNA upstream 41673 83529426 ~ 83531590 (+) True G930325
TU1059615 lncRNA upstream 42783 83526324 ~ 83530480 (+) True G930327
TU1059642 lncRNA downstream 12630 83586588 ~ 83605451 (+) False LOC110512947
TU1059641 lncRNA downstream 15550 83589508 ~ 83592309 (+) False LOC110512947
TU1059632 lncRNA downstream 18816 83592774 ~ 83598616 (+) False LOC110512947
TU1059637 lncRNA downstream 18816 83592774 ~ 83604129 (+) False LOC110512947
TU1059649 lncRNA downstream 21274 83595232 ~ 83602052 (+) True G930344
XM_036934277.1 mRNA upstream 10276 83560090 ~ 83562987 (+) True LOC110512943
XM_036934275.1 mRNA upstream 15864 83549288 ~ 83557399 (+) False LOC118936837
XM_036934276.1 mRNA upstream 15864 83549642 ~ 83557399 (+) False LOC118936837
XR_005034287.1 mRNA upstream 429735 83141497 ~ 83143528 (+) False LOC118936836
XM_036934272.1 mRNA upstream 442234 83115501 ~ 83131029 (+) False LOC110515357
XR_005034291.1 mRNA downstream 59604 83633562 ~ 83635359 (+) False LOC110512947
XR_005034292.1 mRNA downstream 59604 83633562 ~ 83636740 (+) False LOC110512947
XR_005034293.1 mRNA downstream 59614 83633572 ~ 83635359 (+) False LOC110512947
XR_005034511.1 mRNA downstream 170715 83744673 ~ 83744836 (+) True LOC118937117
LOC118937030 mRNA downstream 172701 83746659 ~ 83746784 (+) True LOC118937030
TU1058295 other upstream 537772 83035112 ~ 83035491 (+) True G929370
TU1058228 other upstream 616932 82953145 ~ 82956331 (+) True LOC110512617
TU1058227 other upstream 624095 82941794 ~ 82949168 (+) False LOC110512617
TU1058230 other upstream 624095 82941814 ~ 82949168 (+) False LOC110512617
TU1058233 other upstream 641402 82927725 ~ 82931861 (+) False LOC110512617
TU1059640 other downstream 12630 83586588 ~ 83639961 (+) False LOC110512947
TU1059643 other downstream 12630 83586588 ~ 83598616 (+) False LOC110512947
TU1059635 other downstream 15550 83589508 ~ 83639961 (+) False LOC110512947
TU1059638 other downstream 15550 83589508 ~ 83639961 (+) False LOC110512947
TU1059891 other downstream 319636 83893594 ~ 83946627 (+) True LOC110518749

Expression Profile