RNA id: TU1059663


Basic Information

Item Value
RNA id TU1059663
length 238
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G930357
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83668635 ~ 83670393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgatagtgtcagatattgaatagaggtggtagtgtcagatattgaatagaggtgatagtgtcagatattgaatagaggtgctagtgtcagatattgaatacaAACAAAAGGTTCTCACTCAGTCGAGGTTTGATGAGTAACAATAAAAACATAGCAACAAAGAGAGGACAAATAGCACAATTCAAGTTTCTTTATCAATGACAAATACACTTCATATTAGTAGTCAATACTCACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1059627 lncRNA upstream 4494 83664353 ~ 83665246 (+) True G930339
TU1059631 lncRNA upstream 32074 83602788 ~ 83637666 (+) False LOC110512947
TU1059647 lncRNA upstream 33969 83633552 ~ 83635771 (+) True LOC110512947
TU1059658 lncRNA upstream 44625 83623980 ~ 83625115 (+) True G930352
TU1059601 lncRNA upstream 52652 83616130 ~ 83617088 (+) True G930317
TU1059597 lncRNA downstream 8021 83678414 ~ 83682799 (+) True G930313
TU1059656 lncRNA downstream 19897 83690290 ~ 83723048 (+) True G930350
TU1059684 lncRNA downstream 22997 83693390 ~ 83697156 (+) True G930374
TU1059687 lncRNA downstream 30294 83700687 ~ 83701625 (+) True G930377
TU1059695 lncRNA downstream 54685 83725078 ~ 83725298 (+) True G930384
XR_005034292.1 mRNA upstream 33000 83633562 ~ 83636740 (+) False LOC110512947
XR_005034291.1 mRNA upstream 34381 83633562 ~ 83635359 (+) False LOC110512947
XR_005034293.1 mRNA upstream 34381 83633572 ~ 83635359 (+) False LOC110512947
XM_036934277.1 mRNA upstream 106753 83560090 ~ 83562987 (+) True LOC110512943
XM_036934275.1 mRNA upstream 112341 83549288 ~ 83557399 (+) False LOC118936837
XR_005034511.1 mRNA downstream 74280 83744673 ~ 83744836 (+) True LOC118937117
LOC118937030 mRNA downstream 76266 83746659 ~ 83746784 (+) True LOC118937030
LOC118937033 mRNA downstream 78260 83748653 ~ 83748778 (+) True LOC118937033
XR_005034414.1 mRNA downstream 80254 83750647 ~ 83750810 (+) True LOC118936990
LOC118937031 mRNA downstream 82273 83752666 ~ 83752791 (+) True LOC118937031
TU1059640 other upstream 29779 83586588 ~ 83639961 (+) False LOC110512947
TU1059635 other upstream 29779 83589508 ~ 83639961 (+) False LOC110512947
TU1059638 other upstream 29779 83589508 ~ 83639961 (+) False LOC110512947
TU1059643 other upstream 71124 83586588 ~ 83598616 (+) False LOC110512947
TU1058295 other upstream 634249 83035112 ~ 83035491 (+) True G929370
TU1059891 other downstream 223201 83893594 ~ 83946627 (+) True LOC110518749
TU1059888 other downstream 324280 83994673 ~ 83999903 (+) False LOC110516172
TU1059899 other downstream 330430 84000823 ~ 84009431 (+) True LOC110516172
TU1059971 other downstream 466180 84136573 ~ 84145674 (+) False LOC110515513
TU1059979 other downstream 484546 84154939 ~ 84155714 (+) True G930572

Expression Profile