RNA id: TU1059799


Basic Information

Item Value
RNA id TU1059799
length 224
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G930459
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83739170 ~ 83739393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatacagtgcatttcgaAAAGtgttcagacaccttgacttttttcacatcttgttacgttacagtctgtACAGAAGTCACTGTACAGTGTTGATCTGTTAGAGGTTCATGAGACGGGCTGAATATCAACACAACCATTCTCAGAGCCAGTTTCCCCAAAGACATTCGCAGTGCCCGACTTgtccggacttgaactcgatcgaacatctctggagagatctgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1059695 lncRNA upstream 13872 83725078 ~ 83725298 (+) True G930384
TU1059656 lncRNA upstream 16122 83690290 ~ 83723048 (+) True G930350
TU1059687 lncRNA upstream 37545 83700687 ~ 83701625 (+) True G930377
TU1059684 lncRNA upstream 42014 83693390 ~ 83697156 (+) True G930374
TU1059597 lncRNA upstream 56371 83678414 ~ 83682799 (+) True G930313
TU1059801 lncRNA downstream 234 83739627 ~ 83739914 (+) True G930461
TU1059805 lncRNA downstream 5288 83744681 ~ 83748307 (+) False G930465
TU1059807 lncRNA downstream 5288 83744681 ~ 83756670 (+) True G930465
TU1059813 lncRNA downstream 7465 83746858 ~ 83759436 (+) True G930469
TU1059816 lncRNA downstream 9110 83748503 ~ 83789810 (+) True G930472
XR_005034292.1 mRNA upstream 102430 83633562 ~ 83636740 (+) False LOC110512947
XR_005034291.1 mRNA upstream 103811 83633562 ~ 83635359 (+) False LOC110512947
XR_005034293.1 mRNA upstream 103811 83633572 ~ 83635359 (+) False LOC110512947
XM_036934277.1 mRNA upstream 176183 83560090 ~ 83562987 (+) True LOC110512943
XM_036934275.1 mRNA upstream 181771 83549288 ~ 83557399 (+) False LOC118936837
XR_005034511.1 mRNA downstream 5280 83744673 ~ 83744836 (+) True LOC118937117
LOC118937030 mRNA downstream 7266 83746659 ~ 83746784 (+) True LOC118937030
LOC118937033 mRNA downstream 9260 83748653 ~ 83748778 (+) True LOC118937033
XR_005034414.1 mRNA downstream 11254 83750647 ~ 83750810 (+) True LOC118936990
LOC118937031 mRNA downstream 13273 83752666 ~ 83752791 (+) True LOC118937031
TU1059640 other upstream 99209 83586588 ~ 83639961 (+) False LOC110512947
TU1059635 other upstream 99209 83589508 ~ 83639961 (+) False LOC110512947
TU1059638 other upstream 99209 83589508 ~ 83639961 (+) False LOC110512947
TU1059643 other upstream 140554 83586588 ~ 83598616 (+) False LOC110512947
TU1058295 other upstream 703679 83035112 ~ 83035491 (+) True G929370
TU1059891 other downstream 154201 83893594 ~ 83946627 (+) True LOC110518749
TU1059888 other downstream 255280 83994673 ~ 83999903 (+) False LOC110516172
TU1059899 other downstream 261430 84000823 ~ 84009431 (+) True LOC110516172
TU1059971 other downstream 397180 84136573 ~ 84145674 (+) False LOC110515513
TU1059979 other downstream 415546 84154939 ~ 84155714 (+) True G930572

Expression Profile