RNA id: TU1060006


Basic Information

Item Value
RNA id TU1060006
length 628
lncRNA type intronic
GC content 0.47
exon number 3
gene id G930595
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 84209964 ~ 84212141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagactccatctattggacagagtggaggagactccgtctattggacagagtggaggagactccgtctattggacagagtggaggagactccgtctattggacagagtgggtgtgtgtctagacagcattgagaatagaaggagactcccgtctattggacagagtgggtgtgtgtctagacagcattgagaatagaaggagactccgtctattggacagagtgggtgtgtgtctagacagcattgagaatagaaggagactccgtctattggacagagtgggtgtgtgtctagacAGCATTGAGAATAGAAGGAGACTGAAGAATGTaaacctttttattatgttttcacaAGGACCTGTTTTGATTCTGGATGAAATGGAGTTAGTCTGACTCACGTGTGTCTGTTCAGGGAAGGCTGGAGTTTGtacatctctgtgtgtctctgtgtgaggtCTGAATCAGGTCTGAATCAGGTCTTGTGATTTGGCTAATTCATAGCCGTGTGCGCACACACATTTCTGAATCAGCAGTCTTAGCCAGAAACAGACGTTTTGATGCAGAAagtggggcagagggagaggaagagaggagaagaggagaggagagagaggagaagagtagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1060004 lncRNA upstream 3784 84203633 ~ 84206180 (+) True G930593
TU1060003 lncRNA upstream 8100 84201021 ~ 84201864 (+) True G930592
TU1059999 lncRNA upstream 17235 84192238 ~ 84192729 (+) True G930589
TU1059997 lncRNA upstream 25118 84183643 ~ 84184846 (+) True G930587
TU1059996 lncRNA upstream 26618 84182964 ~ 84183346 (+) True G930586
TU1060015 lncRNA downstream 9667 84221808 ~ 84223200 (+) True G930600
TU1060022 lncRNA downstream 17429 84229570 ~ 84235716 (+) True G930605
TU1060027 lncRNA downstream 30509 84242650 ~ 84242984 (+) True G930610
TU1059970 lncRNA downstream 36113 84248254 ~ 84254670 (+) True LOC110515513
TU1060033 lncRNA downstream 61234 84273375 ~ 84273964 (+) True G930616
XM_036934302.1 mRNA upstream 56400 84147930 ~ 84153564 (+) False LOC118936846
XM_036934301.1 mRNA upstream 58442 84147912 ~ 84151522 (+) False LOC118936846
XR_005034302.1 mRNA upstream 58442 84147912 ~ 84151522 (+) False LOC118936846
XR_005034303.1 mRNA upstream 58442 84147912 ~ 84151522 (+) False LOC118936846
XR_005034300.1 mRNA upstream 91494 84115817 ~ 84118470 (+) False LOC118936845
XM_036934303.1 mRNA downstream 75237 84287378 ~ 84347895 (+) False LOC110514511
XM_036934305.1 mRNA downstream 75237 84287378 ~ 84347895 (+) False LOC110514511
XM_036934306.1 mRNA downstream 75237 84287378 ~ 84347895 (+) False LOC110514511
XM_036934307.1 mRNA downstream 75237 84287378 ~ 84347895 (+) False LOC110514511
XM_036934308.1 mRNA downstream 75237 84287378 ~ 84347895 (+) False LOC110514511
TU1059979 other upstream 54250 84154939 ~ 84155714 (+) True G930572
TU1059971 other upstream 64290 84136573 ~ 84145674 (+) False LOC110515513
TU1059899 other upstream 200533 84000823 ~ 84009431 (+) True LOC110516172
TU1059888 other upstream 210061 83994673 ~ 83999903 (+) False LOC110516172
TU1059891 other upstream 263337 83893594 ~ 83946627 (+) True LOC110518749
TU1060738 other downstream 464418 84676559 ~ 84677078 (+) True G931108
TU1061026 other downstream 931179 85143320 ~ 85149746 (+) True LOC110517086
TU1061067 other downstream 985874 85198015 ~ 85202541 (+) False LOC110515429
TU1061267 other downstream 1120415 85332556 ~ 85335821 (+) False LOC110515949
TU1061508 other downstream 1262145 85474286 ~ 85475128 (+) True G931587

Expression Profile