RNA id: TU1061497


Basic Information

Item Value
RNA id TU1061497
length 1344
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G931585
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85467391 ~ 85471852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttacgatgactgcctaccaagaggcaaaaggcctcctgcgggggcggggttaaaataaattaaataaaaataggacaaaacacacacatcatgacaagagacgacaacaacactacacaaagagacctaagacaacatggtagcaacacagcatggtagcaactcaacatgacaacatggtagtaacaatATGACAAGAGATGACAACAACACTACttaaagagacctaagacaacgtggtagcaacacagcatggtagcaactcaacatgacaacatggtagcaactcaacatgacaacatggtagtaacaatATGACAAGAGAcgacaacaacactacacaaagagacctaagacaacgtGGCAGCAACTCAACatgacaacatggtagtaacaatATGACAAGAGacgacaacaacactacataaagagacctaagacaacgtGGTAGCAACTCAACATGGTGGCAACTCAACatgacaacatggtagcaactcaacatgacaacatggtagtaacaatATGACAAGAGCACAGggcacaaacattattgggcacaaacagcacaaagggtaagaaggtagagacaacaatacatcatgcagagcagccacaactgtcagtaagagtgtccatgattgagtctttgaatgaagaggtgGAGATCAAACTGATATAACTGCAGTTGACATAGCGAAGTAAATGGAAGAATACTCTTATTGCAATGTgaatggctcttaaaagagcctttggttgtgcatagtgtagtctacggtgttgccagggaacagcaccctCCTCAAAAAAGTATGTGGTGAAGAAATCCCGCACACAGATCCCCCATCCTGGTCCTCGTGTCCATCCTCATGACGTTATGCAGGACACAGGTAGCCTTCACACAACCTGAATTCCTCCAGGAGGCAGTCCCAGATGgccctggtcacccaaccttgCAGTGCCCTAAACAGTAACTGTAGGCAATCGTTTTGAAGGAATCTTCAGTTACACGGTATTTGAATATGTTCTCCATGTGGACGATTAGAAAACAGGacagcaaagtgtgtttgtcACAAGCGTTTTAGAACATATTTCTACGGTATTTTTAGAGCATATTACtattgtaatgacctgactaggtCATacaggaacaattgtccagacaaaGGTTGGGTGTATTAACCCAACtctacacaggctactgtttggccgtagcccacgacaaataaatgaaagatactCGTATAAAACAACCCGTGACCTTCTATTTTTGAATACCAGACATAAGAAAGAGACCAATGGCTAAACCTTAAACTTGCAATGCGCCACCCCGCTGCCCTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061504 lncRNA upstream 661 85468293 ~ 85468590 (+) True G931586
TU1061482 lncRNA upstream 2272 85466194 ~ 85466979 (+) False LOC118936854
TU1061484 lncRNA upstream 2272 85466220 ~ 85466979 (+) False LOC118936854
TU1061485 lncRNA upstream 2433 85466194 ~ 85466818 (+) False LOC118936854
TU1061488 lncRNA upstream 2433 85466220 ~ 85466818 (+) True LOC118936854
TU1061468 lncRNA downstream 542 85472394 ~ 85473734 (+) False LOC110513232
TU1061522 lncRNA downstream 26176 85498028 ~ 85499605 (+) True G931599
TU1061455 lncRNA downstream 44746 85516598 ~ 85592174 (+) False G931574
TU1061457 lncRNA downstream 44746 85516598 ~ 85590612 (+) False G931574
TU1061460 lncRNA downstream 44746 85516598 ~ 85587212 (+) False G931574
XR_005034307.1 mRNA upstream 2270 85466176 ~ 85466981 (+) False LOC118936854
trnae-cuc-167 mRNA upstream 12756 85456424 ~ 85456495 (+) True trnae-cuc-167
XM_036934328.1 mRNA upstream 20592 85236443 ~ 85448659 (+) False LOC110515949
XM_036934330.1 mRNA downstream 311 85472163 ~ 85525385 (+) False LOC110513232
XM_036934329.1 mRNA downstream 312 85472164 ~ 85525385 (+) False LOC110513232
XR_005034308.1 mRNA downstream 312 85472164 ~ 85594820 (+) False LOC110513232
XM_036989416.1 mRNA downstream 92319 85564171 ~ 85594820 (+) True LOC110510945
XM_036989417.1 mRNA downstream 422002 85893854 ~ 85950607 (+) False LOC118966668
TU1061267 other upstream 133430 85332556 ~ 85335821 (+) False LOC110515949
TU1061067 other upstream 266710 85198015 ~ 85202541 (+) False LOC110515429
TU1061026 other upstream 319505 85143320 ~ 85149746 (+) True LOC110517086
TU1060738 other upstream 792173 84676559 ~ 84677078 (+) True G931108
TU1059979 other upstream 1313537 84154939 ~ 84155714 (+) True G930572
TU1061508 other downstream 2434 85474286 ~ 85475128 (+) True G931587
TU1061509 other downstream 3769 85475621 ~ 85476131 (+) True G931588
TU1061451 other downstream 30296 85502148 ~ 85504880 (+) True LOC110513232
TU1061456 other downstream 44746 85516598 ~ 85519844 (+) False G931574
TU1061447 other downstream 52104 85523956 ~ 85525041 (+) False G931571

Expression Profile