RNA id: TU1061522


Basic Information

Item Value
RNA id TU1061522
length 287
lncRNA type intronic
GC content 0.33
exon number 2
gene id G931599
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85498028 ~ 85499605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatattactagtgatatggactggaataggactatattactattgatatggaataggactatattactagtgatatggactggaataggactatattactagtgatatggactggaataggactatattactagtgatatggaataggactatattactagtgatatggactggaataggactatattactagtgatatggactggaataggactgtattactagtgatatggactggaataggactatattactagtgatatggactggaataggactatattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061468 lncRNA upstream 24294 85472394 ~ 85473734 (+) False LOC110513232
TU1061493 lncRNA upstream 26176 85467391 ~ 85471852 (+) False G931585
TU1061455 lncRNA downstream 16993 85516598 ~ 85592174 (+) False G931574
TU1061457 lncRNA downstream 16993 85516598 ~ 85590612 (+) False G931574
TU1061460 lncRNA downstream 16993 85516598 ~ 85587212 (+) False G931574
TU1061452 lncRNA downstream 23915 85523520 ~ 85593941 (+) False G931573
TU1061454 lncRNA downstream 23915 85523520 ~ 85593941 (+) False G931573
XR_005034307.1 mRNA upstream 31047 85466176 ~ 85466981 (+) False LOC118936854
trnae-cuc-167 mRNA upstream 41533 85456424 ~ 85456495 (+) True trnae-cuc-167
XM_036934328.1 mRNA upstream 49369 85236443 ~ 85448659 (+) False LOC110515949
XM_036989416.1 mRNA downstream 64566 85564171 ~ 85594820 (+) True LOC110510945
XM_036989417.1 mRNA downstream 394249 85893854 ~ 85950607 (+) False LOC118966668
XM_036934352.1 mRNA downstream 400951 85900556 ~ 85920399 (+) False LOC118936495
XM_036934351.1 mRNA downstream 402262 85901867 ~ 85920399 (+) False LOC118936495
XM_036934336.1 mRNA downstream 429552 85929157 ~ 85945179 (+) False LOC110516966
TU1061509 other upstream 21897 85475621 ~ 85476131 (+) True G931588
TU1061508 other upstream 22900 85474286 ~ 85475128 (+) True G931587
TU1061267 other upstream 162207 85332556 ~ 85335821 (+) False LOC110515949
TU1061067 other upstream 295487 85198015 ~ 85202541 (+) False LOC110515429
TU1061026 other upstream 348282 85143320 ~ 85149746 (+) True LOC110517086
TU1061451 other downstream 2543 85502148 ~ 85504880 (+) True LOC110513232
TU1061456 other downstream 16993 85516598 ~ 85519844 (+) False G931574
TU1061447 other downstream 24351 85523956 ~ 85525041 (+) False G931571
TU1061793 other downstream 285895 85785500 ~ 85786498 (+) True G931776
TU1061788 other downstream 393489 85893094 ~ 85894737 (+) True LOC118966668

Expression Profile