RNA id: TU1061549


Basic Information

Item Value
RNA id TU1061549
length 285
lncRNA type read_through
GC content 0.38
exon number 2
gene id G931624
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85569422 ~ 85569797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctgtttctgttgttgtagtgcagtatgtctgtttctgttgttgtagtgcagtatgtctgtttctgttgttatagtgtagtgcagtatgtctgtttctgttgttatagtgcagtatgtctgtttctgttgttatagtgcagtatgtctgtttctgttgttatagtgcagtatgtctgtttctgttgttatagtgcagtatgtctgtttctgttgttgtagtgcagtatgtctgtttctgttgttgtagtgcagtatgtctgtttctgttgttgtagtgtagtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061522 lncRNA upstream 69817 85498028 ~ 85499605 (+) True G931599
TU1061468 lncRNA upstream 95688 85472394 ~ 85473734 (+) False LOC110513232
TU1061497 lncRNA upstream 97570 85469251 ~ 85471852 (+) False G931585
TU1061554 lncRNA downstream 5505 85575302 ~ 85590375 (+) False G931627
TU1061553 lncRNA downstream 8671 85578468 ~ 85590375 (+) True G931627
TU1061459 lncRNA downstream 9874 85579671 ~ 85592174 (+) False G931574
TU1061458 lncRNA downstream 18427 85588224 ~ 85592174 (+) True G931574
TU1061453 lncRNA downstream 23543 85593340 ~ 85593941 (+) True G931573
XM_036934330.1 mRNA upstream 44037 85472163 ~ 85525385 (+) False LOC110513232
XM_036934329.1 mRNA upstream 44037 85472164 ~ 85525385 (+) False LOC110513232
XR_005034307.1 mRNA upstream 102441 85466176 ~ 85466981 (+) False LOC118936854
trnae-cuc-167 mRNA upstream 112927 85456424 ~ 85456495 (+) True trnae-cuc-167
XM_036934328.1 mRNA upstream 120763 85236443 ~ 85448659 (+) False LOC110515949
XM_036989417.1 mRNA downstream 324057 85893854 ~ 85950607 (+) False LOC118966668
XM_036934352.1 mRNA downstream 330759 85900556 ~ 85920399 (+) False LOC118936495
XM_036934351.1 mRNA downstream 332070 85901867 ~ 85920399 (+) False LOC118936495
XM_036934336.1 mRNA downstream 359360 85929157 ~ 85945179 (+) False LOC110516966
XM_036934337.1 mRNA downstream 359360 85929157 ~ 85945179 (+) False LOC110516966
TU1061447 other upstream 44381 85523956 ~ 85525041 (+) False G931571
TU1061456 other upstream 49578 85516598 ~ 85519844 (+) False G931574
TU1061451 other upstream 64542 85502148 ~ 85504880 (+) True LOC110513232
TU1061509 other upstream 93291 85475621 ~ 85476131 (+) True G931588
TU1061508 other upstream 94294 85474286 ~ 85475128 (+) True G931587
TU1061793 other downstream 215703 85785500 ~ 85786498 (+) True G931776
TU1061788 other downstream 323297 85893094 ~ 85894737 (+) True LOC118966668
TU1061771 other downstream 332123 85901920 ~ 85902612 (+) False LOC118936495
TU1061784 other downstream 382367 85952164 ~ 85952673 (+) True LOC110528615
TU1061780 other downstream 442002 86011799 ~ 86012541 (+) True LOC110528614

Expression Profile