RNA id: TU1061554


Basic Information

Item Value
RNA id TU1061554
length 281
lncRNA type read_through
GC content 0.39
exon number 2
gene id G931627
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85575302 ~ 85590375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTGCAGCATCACCACTATCAATCTGCCCCCCAGAGAGTCTCCTTTCTGACTGCTGATGCAAAGTGGCAGCACACGGTGAAGGCTCCGTATAAAACTACACATGTTGGTGAATCTGGGAACATTTATCAGCCCATTTCCTGACATAACTAATGATGCATTACTAAATGTCACAGATAGATAATGTTGCATTACTAAATGTCACAGATAGATAATGTTGCATTACTAAATGTCACAGATAGATAATGTTGCATTACTAAATGTCACACATAGATAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061549 lncRNA upstream 5505 85569422 ~ 85569797 (+) True G931624
TU1061522 lncRNA upstream 75697 85498028 ~ 85499605 (+) True G931599
TU1061468 lncRNA upstream 101568 85472394 ~ 85473734 (+) False LOC110513232
TU1061497 lncRNA upstream 103450 85469251 ~ 85471852 (+) False G931585
TU1061453 lncRNA downstream 2965 85593340 ~ 85593941 (+) True G931573
TU1061448 lncRNA downstream 3920 85594295 ~ 85594973 (+) False G931571
TU1061449 lncRNA downstream 3920 85594295 ~ 85594973 (+) True G931571
TU1061661 lncRNA downstream 57620 85647995 ~ 85648263 (+) True G931691
TU1061667 lncRNA downstream 102690 85693065 ~ 85693718 (+) True G931696
XM_036934330.1 mRNA upstream 49917 85472163 ~ 85525385 (+) False LOC110513232
XM_036934329.1 mRNA upstream 49917 85472164 ~ 85525385 (+) False LOC110513232
XR_005034307.1 mRNA upstream 108321 85466176 ~ 85466981 (+) False LOC118936854
trnae-cuc-167 mRNA upstream 118807 85456424 ~ 85456495 (+) True trnae-cuc-167
XM_036934327.1 mRNA upstream 126643 85317712 ~ 85448659 (+) False LOC110515949
XM_036989417.1 mRNA downstream 303479 85893854 ~ 85950607 (+) False LOC118966668
XM_036934352.1 mRNA downstream 310181 85900556 ~ 85920399 (+) False LOC118936495
XM_036934351.1 mRNA downstream 311492 85901867 ~ 85920399 (+) False LOC118936495
XM_036934336.1 mRNA downstream 338782 85929157 ~ 85945179 (+) False LOC110516966
XM_036934337.1 mRNA downstream 338782 85929157 ~ 85945179 (+) False LOC110516966
TU1061447 other upstream 50261 85523956 ~ 85525041 (+) False G931571
TU1061456 other upstream 55458 85516598 ~ 85519844 (+) False G931574
TU1061451 other upstream 70422 85502148 ~ 85504880 (+) True LOC110513232
TU1061509 other upstream 99171 85475621 ~ 85476131 (+) True G931588
TU1061508 other upstream 100174 85474286 ~ 85475128 (+) True G931587
TU1061793 other downstream 195125 85785500 ~ 85786498 (+) True G931776
TU1061788 other downstream 302719 85893094 ~ 85894737 (+) True LOC118966668
TU1061771 other downstream 311545 85901920 ~ 85902612 (+) False LOC118936495
TU1061784 other downstream 361789 85952164 ~ 85952673 (+) True LOC110528615
TU1061780 other downstream 421424 86011799 ~ 86012541 (+) True LOC110528614

Expression Profile