RNA id: TU1061661


Basic Information

Item Value
RNA id TU1061661
length 269
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G931691
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85647995 ~ 85648263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagtagatttagttgtctaaaggaaatgacaacacatttacagtctagtagatttagttttctataggaaacgccaacacatttacagtctagtagatttagttgtctataggaaatgacaacacatttacagcctAGTAGATTTAGATGTTTGTaggaaatgcaaacacatttacagtctagtagatttagttgtctataggaaatgccaacacatttacagtctagtagatttagtagtctaaaggaaatgacaacacatttacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061450 lncRNA upstream 53022 85523956 ~ 85594973 (+) False G931571
TU1061448 lncRNA upstream 53022 85594295 ~ 85594973 (+) False G931571
TU1061449 lncRNA upstream 53022 85594295 ~ 85594973 (+) True G931571
TU1061452 lncRNA upstream 54054 85523520 ~ 85593941 (+) False G931573
TU1061454 lncRNA upstream 54054 85523520 ~ 85593941 (+) False G931573
TU1061667 lncRNA downstream 44802 85693065 ~ 85693718 (+) True G931696
TU1061670 lncRNA downstream 46982 85695245 ~ 85695605 (+) True G931699
TU1061673 lncRNA downstream 58623 85706886 ~ 85707330 (+) True G931702
TU1061674 lncRNA downstream 59120 85707383 ~ 85708450 (+) True G931703
TU1061675 lncRNA downstream 60261 85708524 ~ 85710123 (+) True G931704
XR_005034308.1 mRNA upstream 53175 85472164 ~ 85594820 (+) False LOC110513232
XM_036989416.1 mRNA upstream 53175 85564171 ~ 85594820 (+) True LOC110510945
XM_036934330.1 mRNA upstream 122610 85472163 ~ 85525385 (+) False LOC110513232
XM_036934329.1 mRNA upstream 122610 85472164 ~ 85525385 (+) False LOC110513232
XR_005034307.1 mRNA upstream 181014 85466176 ~ 85466981 (+) False LOC118936854
XM_036989417.1 mRNA downstream 245591 85893854 ~ 85950607 (+) False LOC118966668
XM_036934352.1 mRNA downstream 252293 85900556 ~ 85920399 (+) False LOC118936495
XM_036934351.1 mRNA downstream 253604 85901867 ~ 85920399 (+) False LOC118936495
XM_036934336.1 mRNA downstream 280894 85929157 ~ 85945179 (+) False LOC110516966
XM_036934337.1 mRNA downstream 280894 85929157 ~ 85945179 (+) False LOC110516966
TU1061447 other upstream 122954 85523956 ~ 85525041 (+) False G931571
TU1061456 other upstream 128151 85516598 ~ 85519844 (+) False G931574
TU1061451 other upstream 143115 85502148 ~ 85504880 (+) True LOC110513232
TU1061509 other upstream 171864 85475621 ~ 85476131 (+) True G931588
TU1061508 other upstream 172867 85474286 ~ 85475128 (+) True G931587
TU1061793 other downstream 137237 85785500 ~ 85786498 (+) True G931776
TU1061788 other downstream 244831 85893094 ~ 85894737 (+) True LOC118966668
TU1061771 other downstream 253657 85901920 ~ 85902612 (+) False LOC118936495
TU1061784 other downstream 303901 85952164 ~ 85952673 (+) True LOC110528615
TU1061780 other downstream 363536 86011799 ~ 86012541 (+) True LOC110528614

Expression Profile