RNA id: TU1061675


Basic Information

Item Value
RNA id TU1061675
length 1600
lncRNA type intronic
GC content 0.47
exon number 1
gene id G931704
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85708524 ~ 85710123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcacaaaataaactgaaaccaaaacaaacagcaaatgtatCCAACCGGTTTGTAGATTCAAAGATCAAATACTAAATGTTTgattactttaatacacatatccAAATACTTTTGGTTCACTAAAACGGGTGGActaaacagttcacctgacacaccCATCTGTTTCGCCTCCCAGGAAAGTTCCCGACGGTTCCGTTACCGAGTTCCTACCGAGAGTATCCAAAGTCTGCCGATTCATCTCTTCTTCCCGAGCTGATGCAACTAGGCAGGGCCAGCCGAACGGCGATACATACATACGAAGAGTCAGAGAACTTACTCACAACCCTTTTCATGCTGTGGGGGAACCAGTCAAAATCTCTCCAGATACTCATcgactctggggccgatgagagttttatggacgctaccctggtgtctgagctgaacatccccactcaacccctctccattcccatggatgttagagcCCTTGGTGGGCactctataggccgggtcactCATAATACTCATCAACCTACGGGAACCACAACGATACAATCCAATTCCTGCTAATtaagtctcctcaggttcccgtggtattgggaATATATTGGCTCCATCGACACAATCAAATAAAatttcaaaaatcaaatcaaatgtatttatatagcccttcttacatcagctgatatctcaaagtgctgtacagaaacctagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggttaggaaaaactccctagaaaggccaaaccctaggaagaaacctagagaggaaccagcctataagggttggccagtcctcttctggctgtgccgggtggagattataacagaacatggcaagatgttcaaatgttcataaatgaccagcatggtcaaataataataatcacagtagttgttgagggtgcagccAGTCAGCACTTCAGGAGTAACTGTCAGTTGGCTTTTAATAGGCGATCATTacgagtatctctaccgctcctgctgtctctagagagttgaaaacagcaggtctgggacaggtagcacgtcctgtaaacaggtcagggttccatagccacagaccgtttaaactggagcagcagcacggccaggtaaggagtcatcatgccaggtagtcctgaggcatggtcttagggctcaggtcctccaagagagaaagaaaaagagagagaaagaaagacagaattagagagagcatacttaaattcacacaggacactggataagacaggagaagtactccagatataacaaactgaccctagccccccgacacaaactactgcagcataaatattggAGGTTGAGACagtaggggtcaggagacactgtggccccatccgatgatacccccggacagggccaaacaggaaggatataaccccacacagttttccaaagcacagcccccacaccactagagggatatcttcaaccaccaacttaccatcctgaggcaAGGCCGagaatagcccacaaagatctcagccacggcacaacccaaggggagggacgccaacccagacaggaagatcacgtcattgactcaacccactcaagtgacgcacccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061674 lncRNA upstream 74 85707383 ~ 85708450 (+) True G931703
TU1061673 lncRNA upstream 1194 85706886 ~ 85707330 (+) True G931702
TU1061670 lncRNA upstream 12919 85695245 ~ 85695605 (+) True G931699
TU1061667 lncRNA upstream 14806 85693065 ~ 85693718 (+) True G931696
TU1061661 lncRNA upstream 60261 85647995 ~ 85648263 (+) True G931691
TU1061676 lncRNA downstream 406 85710529 ~ 85710824 (+) True G931705
TU1061680 lncRNA downstream 9186 85719309 ~ 85720083 (+) True G931709
TU1061682 lncRNA downstream 12243 85722366 ~ 85723702 (+) True G931711
TU1061685 lncRNA downstream 13893 85724016 ~ 85725204 (+) True G931712
TU1061688 lncRNA downstream 15978 85726101 ~ 85726445 (+) True G931713
XR_005034308.1 mRNA upstream 113704 85472164 ~ 85594820 (+) False LOC110513232
XM_036989416.1 mRNA upstream 113704 85564171 ~ 85594820 (+) True LOC110510945
XM_036934330.1 mRNA upstream 183139 85472163 ~ 85525385 (+) False LOC110513232
XM_036934329.1 mRNA upstream 183139 85472164 ~ 85525385 (+) False LOC110513232
XR_005034307.1 mRNA upstream 241543 85466176 ~ 85466981 (+) False LOC118936854
XM_036989417.1 mRNA downstream 183731 85893854 ~ 85950607 (+) False LOC118966668
XM_036934352.1 mRNA downstream 190433 85900556 ~ 85920399 (+) False LOC118936495
XM_036934351.1 mRNA downstream 191744 85901867 ~ 85920399 (+) False LOC118936495
XM_036934336.1 mRNA downstream 219034 85929157 ~ 85945179 (+) False LOC110516966
XM_036934337.1 mRNA downstream 219034 85929157 ~ 85945179 (+) False LOC110516966
TU1061447 other upstream 183483 85523956 ~ 85525041 (+) False G931571
TU1061456 other upstream 188680 85516598 ~ 85519844 (+) False G931574
TU1061451 other upstream 203644 85502148 ~ 85504880 (+) True LOC110513232
TU1061509 other upstream 232393 85475621 ~ 85476131 (+) True G931588
TU1061508 other upstream 233396 85474286 ~ 85475128 (+) True G931587
TU1061793 other downstream 75377 85785500 ~ 85786498 (+) True G931776
TU1061788 other downstream 182971 85893094 ~ 85894737 (+) True LOC118966668
TU1061771 other downstream 191797 85901920 ~ 85902612 (+) False LOC118936495
TU1061784 other downstream 242041 85952164 ~ 85952673 (+) True LOC110528615
TU1061780 other downstream 301676 86011799 ~ 86012541 (+) True LOC110528614

Expression Profile