RNA id: TU1061749


Basic Information

Item Value
RNA id TU1061749
length 920
lncRNA type read_through
GC content 0.45
exon number 5
gene id G931749
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85848782 ~ 86086171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcagagacagaggcatccattttttttaaaggaacaggattgttttatttattcaacACGATCTGAACatattatatttttttaccaTTCCCAAAAGCGCCTTAgactgttactatccattctaccattaggttgataccccaacactgttactatccattctaccattaggttgataccccaacactgttactatccattctaccattaggttgataccccaacactgttactatccattctaccattaggttggtaccccaacactgttactgtccattaggttgataccccaacactgttactgtccattaggttggtaccccaacactgttactatccattaTACCATTAGGTTGATACCCCAGCATtgttactatccattctaccattaggttggtaccccaaaACTGTTACTATCCATGCaaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattgggttggtaccccaacactgttactgtccCCATTCTACCATTAtgttggtaccccaacactgttgaTCTGAAGCTGTGAACAAAGATAGGCGTCCAGCTTCCCAAGAAGGTTGATCATCCTGGAACACGACTCAGTTCCTTTTCTCAACACCATGTCGATGATGTCACGTGCCTTCTCTGCCCTCTCAGCTATCACCTTCACTGACTCCATTTCCTCCTGGTTGATGACTGTGTGTTGCAGGAGTCTGTCCAGCAGACCATCCAGGACAGGTCTTGACACTCGTTTCACAAACTCTGTCCGTACAGAACGCAGCTGCTGCTCTGCAGAACCAGTCAGACTGCTCTCAGCCGGACGCCCTGCCCCCAACACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061818 lncRNA upstream 521 85847794 ~ 85848261 (+) True G931794
TU1061806 lncRNA upstream 33481 85814991 ~ 85815301 (+) True G931786
TU1061798 lncRNA upstream 50335 85796556 ~ 85798447 (+) True G931780
TU1061766 lncRNA upstream 73331 85774091 ~ 85775451 (+) False G931762
TU1061767 lncRNA upstream 73331 85774091 ~ 85775451 (+) True G931762
TU1061928 lncRNA downstream 12535 86098706 ~ 86106930 (+) False G931869
TU1061931 lncRNA downstream 12535 86098706 ~ 86103470 (+) False G931869
TU1061925 lncRNA downstream 13325 86099496 ~ 86111379 (+) False G931869
TU1061929 lncRNA downstream 17034 86103205 ~ 86111379 (+) False G931869
TU1061930 lncRNA downstream 17034 86103205 ~ 86111379 (+) False G931869
XR_005034308.1 mRNA upstream 253962 85472164 ~ 85594820 (+) False LOC110513232
XM_036989416.1 mRNA upstream 253962 85564171 ~ 85594820 (+) True LOC110510945
XM_036934330.1 mRNA upstream 323397 85472163 ~ 85525385 (+) False LOC110513232
XM_036934329.1 mRNA upstream 323397 85472164 ~ 85525385 (+) False LOC110513232
XR_005034307.1 mRNA upstream 381801 85466176 ~ 85466981 (+) False LOC118936854
XM_036934361.1 mRNA downstream 65832 86152003 ~ 86182526 (+) False LOC118936859
XM_036934362.1 mRNA downstream 114873 86201044 ~ 86209191 (+) False LOC110513338
XM_036934363.1 mRNA downstream 114935 86201106 ~ 86209191 (+) False LOC110513338
XM_036934367.1 mRNA downstream 144609 86230780 ~ 86285648 (+) True LOC110514691
XR_005034311.1 mRNA downstream 171086 86257257 ~ 86258472 (+) False LOC118936862
TU1061793 other upstream 62284 85785500 ~ 85786498 (+) True G931776
TU1061447 other upstream 323741 85523956 ~ 85525041 (+) False G931571
TU1061456 other upstream 328938 85516598 ~ 85519844 (+) False G931574
TU1061451 other upstream 343902 85502148 ~ 85504880 (+) True LOC110513232
TU1061509 other upstream 372651 85475621 ~ 85476131 (+) True G931588
TU1062162 other downstream 115027 86201198 ~ 86204184 (+) True LOC110513338
TU1062423 other downstream 356879 86443050 ~ 86475840 (+) True G932184
TU1062558 other downstream 637766 86723937 ~ 86751664 (+) True LOC110518842
TU1062664 other downstream 911615 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 1032911 87119082 ~ 87126721 (+) True LOC110516832

Expression Profile