RNA id: TCONS_00003834


Basic Information

Item Value
RNA id TCONS_00003834
length 2829
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_001955
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11260154 ~ 11312342 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGAAGCACCCGCTTCACGTCCATTAAAAGCTAAATTGATGGCTTTTCTATAAAATACTGTCAAATATTGAAAAACCGCGGATAAATGACAGTTTTCCAGTGACAAATGATGTTTGGTATCGAACAAAAAGGCGGCGAGCAGCAGACGTGAGCGGACATTGGAGCTGAATCTCCCGAATGAAGGGGAGGAGGCTCAACATGGAGGACTGCTTGCACACTTCCTCTGACAACCTCGCTAAACTAGTGAAATGGGCCCACAGTCACGGGACAATCTGCACCTTGATCCCCAACCTCAAACACATGCTGAACGAGGGCTCCCATGGGACCCTCACGGCCCTGTGGGGCTGCAGCGCCGGGCATGCCTACCACTGGCCCCTCAACACCACCTGCAAAACCGGAAACAAGGAGCGCATGTGTTTCCAGGAAAGTCGGAGCATCAACACAGACACTATGATTCAGGCCGCCGCCGCCATGCAAAACTCCTCGGCAGATCGATTCctcggaaaaaaaaacaaaggcgaTTCCAATCAGATCCACGACTCCTGCGATATTTCCAACTGCAGTGAACCTTCAGAAATGGACGATAATGGCGAGGAGTATAACAACAACTTGTACGACATAGTCTGTGAATCATCAGCAACTGATGAAGATGGTGATTCTGACTTCAATCACACGCCAAACATCTCGCACAGGAAAAGACATGGAAAAGGGACGGGACATGAAGACAGTATTGACCCCTCCTTGAAGAAAATCAAACAAGAAAGAGGCGAAGATTACTACAGTTTGGCCAATCCACAGATTCCCAGCAGTTCAGAGATAAACCGCTCTACCGAGTTGCCCAAACCGAACCTCCAGAGCACACCTTTGATGTCCCAGAAACCTTCTTCCATAGATGGAGACTCAATGGGGGTGTCGTCATCTCCCTTGGACAGTTCTCCTACTTCCATGATCAAGCCACTGCGTGCACCTTTCCATGTTACCCAAAATAAAGTGCACATGAACTCTAATCCAGCGTGCAGTCAGAGTATGCCCACTTTACCTCATCCTGGACGGATTGACGCTATGGGTGTCCTGCACAGAGATGAATATCCCAGACCGTCTTTGTCTTACGGAGAGGCTTCGATTGGCGCAAACCCAGAAATGGATCTTCTATCTGCACAGGCACTTAGTACAGAAGCGAGAGCAGACAACACAGACCATCTGATTCCTGCAGCGCATAGTTCAGAAGAGCAGTTCGGCCCGTCAGACCTAAGCCCCAACAGCGACAGGTATCTGGAAGAGAGAAAACACCTGGAAGAGTTTATAACAGGCATAGACACGGTGACCCTACAAAACCTGCAGACAGTGATCGACCGCATTCTGGTGTTTCACGAGCGGACGCAGATGCCGCTGTCCAGTCCGGCCCGGCTGGGGGAGCAGGAATTGTTCCCTGGATCTGGCCTGTACCTGCCGCATTATAAACTGGCCTCCATGCTGCAGGAGTCCCGGCAAGACAGCATGAGGCTATTCCACTTGCTGTTCGAGCACTTCTTCAGCGAGGAGGATCTGAATGGTGCCGTCGCATTCGGAAAGAGAGGGAAAGTTCCAGACGGCAAGAAGGTCTTGGACAGGAGAAAAGTGGACGGGATTATGTCTTATGTTCTACGCTGCTCCACAATAGACGGATGGACGCCTGTGGAATCGTCGAAGCTGAAGAAGGCCTGCATTAATAAATGCAGGCTCCGAATCGAGATACAGTCGGTTCCAGTTGTACCTTTGTGTACAGAAGAGATTGTTACCAAATCAATTTCTAACCACATGGATGAGAGAGCGTATCCAGAACAGAACGAGAAGACGATTCGCAGCACCCAAACAGCTCTCCGCAACTTTCGGGATTTCCTGGTTTCAAAGTATCCAAACGAGACCAGAGAAATTTACAACATCCCCTGCCACGAGTTAGACATCTACTTGGCCTCCTTCTTCGTGGATGCTCGCCAACGGGATGGCTCAGAGTATGAGCCCAACAGCCTGGCAAACTATCAGTGTGGCCTGGAACGCTATCTGAAGGAGCATCGGTATGCCTACAGTATTACAAGAGACCGCGAGTTCCAGAGATCCCAGGATGCCCTCAAGCAAAAGCAACTGGAGCTCAAGTTCAAAGGTAAAGGCAACAAACCACACAAGTCAATGAAACTGACCCTTGCTGATGAGCTGCTCCTGAGAAAACGGGGGCTTCTGAGTCGCTTCAACCCTGAGGGTCTGCTTAACCTGGTGTGGCTCAACAACACCAAGGCTTTTGGCCACTGTACAGGTTTCCACAGTTCCACTCTCAAATGGGGCGATGTGCGGTTGCTCACCACAGAAACTGGATCAGAGTGTCTAGAGTGGACCTACCAGGATTTAAGTGACCCTAATGCCAGAAACAGAAGATCCACAACTGAGTGCCGGATCTATGCTACTCCACACGCTCCTCAAACCTGCCCAGTAGAAGACTACAAGCATTTTGCTCAACGCAGACCTCAAGCCATGCTCTACGAAGATGCCCCATTTTATCTGTCTATCAAACCCGTGGTTAACCTTGCCGCCCTACACTGGTACAACTGCCAAGCTCTGGGAAAAAACAAATTAGCAAAGATGGTCAAGACCATGTGTGAGAAAGGCAACATTCCAGGGAGAAAGACCAATTTTAGTGTATATCAGAGTTGCAGTAGCTTGTCCGAGGCTCAGAGCAATCAGCTAGTTCTGATCTGCAATGACCTCAGGCAACAAGCCGTCCATTCAGGTAGTTCCCATCCCGGCAGCACCAACTTTGTCATTACTGGTTCTTTCGACTCTACTGACTCAGCTTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000135355

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005834 lncRNA upstream 20997 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00003828 lncRNA upstream 295581 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005833 lncRNA upstream 459435 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA upstream 459435 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003822 lncRNA upstream 465253 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00005688 lncRNA downstream 201044 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005835 lncRNA downstream 340252 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA downstream 340407 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005690 lncRNA downstream 613731 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00005689 lncRNA downstream 613731 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00003831 mRNA upstream 2300 11260170 ~ 11280583 (+) False XLOC_001955
TCONS_00003832 mRNA upstream 6060 11261576 ~ 11276823 (+) False XLOC_001955
TCONS_00003829 mRNA upstream 188756 11038192 ~ 11094127 (+) True XLOC_001953
TCONS_00003826 mRNA upstream 284384 10972795 ~ 10998499 (+) False XLOC_001952
TCONS_00003823 mRNA upstream 458597 10801719 ~ 10824286 (+) False XLOC_001951
TCONS_00003838 mRNA downstream 43499 11355841 ~ 11372541 (+) False XLOC_001957
TCONS_00003839 mRNA downstream 43542 11355884 ~ 11368476 (+) True XLOC_001957
TCONS_00003840 mRNA downstream 85769 11398111 ~ 11501424 (+) True XLOC_001958
TCONS_00003842 mRNA downstream 455449 11767791 ~ 11788565 (+) True XLOC_001962
TCONS_00003845 mRNA downstream 1204717 12517059 ~ 12730451 (+) True XLOC_001967
TCONS_00003830 other upstream 166913 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003827 other upstream 295581 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003825 other upstream 459435 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003821 other upstream 479527 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003803 other upstream 1369706 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003841 other downstream 186351 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003843 other downstream 462063 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003844 other downstream 1020911 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003853 other downstream 2544450 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003854 other downstream 2618506 13930848 ~ 13931718 (+) True XLOC_001973

Expression Profile

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