RNA id: TU1061877


Basic Information

Item Value
RNA id TU1061877
length 1137
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G931837
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85974303 ~ 86085007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattatATTTATTTATGATATTATGAATAGAAATGGAGTTGTCACATATgcagttattgaaaatatatcAGAATGTCTGTTCAATCCACATTTACAACCAACTTACGGCagcactactttaaaatggaggaggcaagtggaaaagggaGAAGGTACTTGTTTGTCTGCCATATAGGGGGCAGCGTTTTCACTTTAATAGCGTGCCcaaagtgaactgaatataattttttttttagttttcgtccgacgttcgcctggacctgcacgagcgtttggatgtgtgtactaaacgcgctaagaaaagtagctacttggacataaataatggacaatatcgaacaaaacaacaatttattgtggaactaggattcctgggagtgcattctgaggaagatcatcaaaggtaagggaatatttatcatgtagtttcgtatttctgttgactccaacatggcagagaATTTATTTTTCTGGGTGTTTTTTggacttggcggtgatctaacataatcatatgttgtgtttTAGCTATAAAACGTTtttaaatcggacatgatgggtagattaacaatatgtttatctttcatttgctctattggacttgttaatgtgtgaaagttacatatttaaaaaatatatttttgaattttcCGCGCTGCCTTTTAAGCGGAATGTTGTTGCTAGCGGAAcgtgtgtcctagacaggttaaagatacaaattggctgaaaggaactggcataaatggaaaaatataccagtttcatcTGAGGGCAAACATGTTGACAGCTGCGACAAAAAATAAATGGGAGGAGATTTTCGATttaccaattccatggcacatggtttatgaactggtacaaaaaaacaacaacacttaaTTCAAcgagtttttcaatttaaatgattatatAAAATTATTGCCGCTTACAGAATGCTATATATATGGGGCAACaatacaacaatctcagctctgtagatattgttgcgaagagacagaataaatagatcatttattctggtattgccctGATGTAGCTAGTTTCTGGTCATAGGTTCAGGAATGGTTAGAAAATcatataataatactatataataatatataatataatatataataatatataataatactatataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061874 lncRNA upstream 3166 86079143 ~ 86080223 (+) True G931835
TU1061882 lncRNA upstream 16310 85974303 ~ 86067079 (+) False G931837
TU1061878 lncRNA upstream 48329 85974303 ~ 86035060 (+) False G931837
TU1061875 lncRNA upstream 52872 85969817 ~ 86030517 (+) True G931836
TU1061872 lncRNA upstream 53054 86025232 ~ 86030335 (+) True G931834
TU1061747 lncRNA downstream 157 86085164 ~ 86086171 (+) True G931749
TU1061928 lncRNA downstream 13699 86098706 ~ 86106930 (+) False G931869
TU1061931 lncRNA downstream 13699 86098706 ~ 86103470 (+) False G931869
TU1061925 lncRNA downstream 14489 86099496 ~ 86111379 (+) False G931869
TU1061929 lncRNA downstream 18198 86103205 ~ 86111379 (+) False G931869
XM_036934356.1 mRNA upstream 65814 86008932 ~ 86017575 (+) False LOC110528614
XM_036989418.1 mRNA upstream 74589 85994536 ~ 86008800 (+) True LOC118966669
XM_036934355.1 mRNA upstream 126297 85951030 ~ 85957092 (+) False LOC110528615
XM_036934338.1 mRNA upstream 138208 85929157 ~ 85945181 (+) False LOC110516966
XM_036934361.1 mRNA downstream 66996 86152003 ~ 86182526 (+) False LOC118936859
XM_036934362.1 mRNA downstream 116037 86201044 ~ 86209191 (+) False LOC110513338
XM_036934363.1 mRNA downstream 116099 86201106 ~ 86209191 (+) False LOC110513338
XM_036934367.1 mRNA downstream 145773 86230780 ~ 86285648 (+) True LOC110514691
XR_005034311.1 mRNA downstream 172250 86257257 ~ 86258472 (+) False LOC118936862
TU1061780 other upstream 70848 86011799 ~ 86012541 (+) True LOC110528614
TU1061784 other upstream 130716 85952164 ~ 85952673 (+) True LOC110528615
TU1061771 other upstream 180777 85901920 ~ 85902612 (+) False LOC118936495
TU1061788 other upstream 188652 85893094 ~ 85894737 (+) True LOC118966668
TU1061793 other upstream 296891 85785500 ~ 85786498 (+) True G931776
TU1062162 other downstream 116191 86201198 ~ 86204184 (+) True LOC110513338
TU1062423 other downstream 358043 86443050 ~ 86475840 (+) True G932184
TU1062558 other downstream 638930 86723937 ~ 86751664 (+) True LOC110518842
TU1062664 other downstream 912779 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 1034075 87119082 ~ 87126721 (+) True LOC110516832

Expression Profile